Kernel-Based RV (KBRV) coefficient

Kernel-Based RV (KBRV) coefficient is a method to evaluate the correlation between two genomic matrices.

Simulation study:

s1.py, s2.py, s3.py, s4.py, s5-ab.py, s5-cd, s6-ab, s6-cd

Real data study:

r1-1, r1-2, r2-data_prepare, r2-corr_calculate

Supplementary:

code: s5-s.py, s5-ss.py

data: Processed exon-level RNA-Seq data (GSE79044) can be downloaded here. The raw RNA-Seq data are available on NCBI

Citation: Zhihao Yao, Jing Zhang, and Xiufen Zou. A general index for linear and nonlinear correlations for high dimensional genomic data. BMC genomics 21 (2020): 1-14.