Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

reticulate-free single cell format conversion

Misc utilities for receptor gene sequences

A tool for detecting somatic variants in single cell data

Interactive visualisation of CellphoneDB results

trajectory inference

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

Platform to experiment with the AI Software Engineer. Terminal based. NOTE: Very different from https://gptengineer.app

A pure Python implementation of a circle packing algorithm

Read various formats into AnnData and MuData

Set up your GitHub Actions workflow with a specific version of node.js

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

Aligning gene expression trajectories of single-cell reference and query systems

mgatk: mitochondrial genome analysis toolkit

python tools for TCR:peptide-MHC modeling and analysis

A set of basic scripts to handle genomics tasks using linux shell

A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

Python implementation of the Slingshot pseudotime algorithm

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

python Circos

lmerSeq

Algorithmically create or extend categorical colour palettes

Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expr…

A library for the Immune Repertoire Classification Problem

ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

Using BCR and expression for sequence embedding

A scientific library that computes the relative distances between bcr sequences