Bioinformatics Workbook repository

Bioinformatics code libraries and scripts

Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine

Materials for teaching R and tidyverse

帮助初学者快速入门生物信息学必备技能的网络资源

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Open source code for AlphaFold.

ggplot2: elegant graphics for data analysis

R toolkit for single cell genomics

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Single-cell analysis in Python. Scales to >1M cells.

TCGAbiolinks

A curated list of awesome Bioinformatics libraries and software.

A toolkit for single-cell immune profiling

Papers with code for single cell related papers

Live-seq

R Bioinformatics Cookbook, published by Packt

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

The code of bioinformatic analysis in paper A novel prognostic signature revealed the interaction of immune cells in tumor microenvironment based on single-cell RNA sequencing for Lung Adenocarcinoma

🔬 Path to a free self-taught education in Bioinformatics!

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

a curated list of R tutorials for Data Science, NLP and Machine Learning

生信技能树单细胞转录组分析实战学习笔记

Analysis Pipeline for Single Cell ATAC-seq

Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

SIFT-seq data for patient 21LT2