using Pytorch CNN and Python PyQT5

The official implement of paper CriDiff: Criss-cross Injection Diffusion Framework via Generative Pre-train for Prostate Segmentation.

Medical Image Segmentation with Diffusion Model

Implementation of MedSegDiff in Pytorch - SOTA medical segmentation using DDPM and filtering of features in fourier space

[MICCAI 2024] Codebase for "Stable Diffusion Segmentation for Biomedical Images with Single-step Reverse Process"

The code implement of "Advancing Medical Image Segmentation: Morphology-Driven Learning with Diffusion Transformer"

Diff-SFCT: A Diffusion Model with Spatial-Frequency Cross Transformer for Medical Image Segmentation

Medical Image Segmentation Method Based on Swin Transformer with Diffusion Probabilistic Model

Implementation for polyp segmentation using diffusion transformers

Conditional diffusion model with spatial attention and latent embedding for medical image segmentation

[MICCAI'24 DEMI Workshop - Best Paper Award] Evaluating Histopathology Foundation Models for Few-shot Tissue Clustering: an Application to LC25000 Augmented Dataset Cleaning

🫁 DRU-Net: Lung carcinoma Segmentation using multi-lens distortion and fusion refinement network

[MICCAI' 24] DiffRect: Latent Diffusion Label Rectification for Semi-supervised Medical Image Segmentation

Handled Highly Imbalanced Data

Code repository for the online course Machine Learning with Imbalanced Data

Ressources of histopathology datasets

KBSMC colon cancer grading dataset repository

Medical Image Analysis (MEDIA_2021) paper: Joint Categorical and Ordinal Learning for Cancer Grading in Pathology Images

I included 7 sample lung pathology images (Lung Adenocarcinoma, Squamos Cell Carcinoma, and Mesothelioma). Attached are folders containing each respective samples and specific normalization results.

Unofficial Instructions for downloading TCIA-CPTAC Pathology Images Lung Cohorts: LUAD, LSCC (aka LUSC)

Haowen Zhou, Mark Watson, Cory T. Bernadt, Steven (Siyu) Lin, Chieh-yu Lin, Jon. H. Ritter, Alexander Wein, Simon Mahler, Sid Rawal, Ramaswamy Govindan, Changhuei Yang*, and Richard J. Cote*. "AI-…

Multimodal Fusion of Liquid Biopsy and CT Enhances Differential Diagnosis of Early-stage Lung Adenocarcinoma

Model to predict Lung Cancer using multimodal tabular data - MICCAI Hackathon 2022

Code accompanying the paper "Multimodal fusion of imaging and genomics for lung cancer recurrence prediction" - Vaishnavi Subramanian, Minh N. Do, Tanveer Syeda-Mahmood (ISBI 2020)

Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)

ViT Attention map visualization (using Custom ViT and Pytorch timm module)

Visualizing ViT attention maps