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  1. Cytocipher Cytocipher Public

    Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expr…

    Jupyter Notebook 35 6

  2. Medulloblastoma Medulloblastoma Public

    Forked from BiomedicalMachineLearning/Medulloblastoma

    Primary analysis of Medulloblastoma PDX models for the paper: https://www.biorxiv.org/content/10.1101/2023.02.15.528116v1

    Jupyter Notebook 1

  3. stLearn stLearn Public

    Forked from BiomedicalMachineLearning/stLearn

    A novel machine learning pipeline to analyse spatial transcriptomics data

    Python

  4. Sheriff Sheriff Public

    Read alignment processing for Superb-seq data.

    Python 1

  5. superb_analysis superb_analysis Public

    Analysis of the Superb-seq data after CRISPR/cas9 edit site calling with Sheriff: https://github.com/BradBalderson/Sheriff

    Jupyter Notebook

  6. DNACipher DNACipher Public

    DNACipher is a deep learning model that predicts genomic signals given inputted DNA sequence, cell type, and assay.

    Jupyter Notebook 3