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Insights: CGATOxford/UMI-tools
September 13, 2024 – October 13, 2024
Overview
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1 Release published by 1 person
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v1.1.6
published
Oct 3, 2024
2 Pull requests merged by 2 people
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Update testing suite to pytest
#655 merged
Oct 3, 2024 -
makes umi_tools deterministic with --random-seed
#550 merged
Oct 1, 2024
1 Pull request opened by 1 person
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Add workflow to push releases to pypi
#665 opened
Oct 10, 2024
8 Issues closed by 1 person
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python3.12 support as release
#662 closed
Oct 3, 2024 -
TypeError: 'encoding' is an invalid keyword argument for this function
#643 closed
Oct 3, 2024 -
Filter for low read-depth UMIs?
#649 closed
Oct 3, 2024 -
Compilation fails on python 3.12
#627 closed
Oct 3, 2024 -
umi_tools extract: UMI on 5' read 1 and 3' read 2
#623 closed
Oct 3, 2024 -
UMI-tools dedup and heavily soft-clipped CIGAR strings due to overlapping PE reads...
#621 closed
Oct 3, 2024 -
samtools error in umi-tools dedup
#638 closed
Oct 3, 2024 -
'extract' is not a UMI-tools command.
#645 closed
Oct 3, 2024
2 Issues opened by 2 people
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v1.1.5 kicking out one of pair of discordant reads ; v1.1.1 not showing same behaviour
#664 opened
Oct 9, 2024 -
No v1.1.6 on conda, and only prebuilt for MacOS (no source) on pypi
#663 opened
Oct 9, 2024
6 Unresolved conversations
Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.
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UMItools extract with nanopore long reads
#661 commented on
Sep 17, 2024 • 0 new comments -
group method: not all UMI-containing reads assigned UG tag
#635 commented on
Oct 3, 2024 • 0 new comments -
Documentation improvement suggestion
#648 commented on
Oct 3, 2024 • 0 new comments -
UMI-tool 1.1.5 not working with --per-gene --per-contig --gene-transcript-map
#646 commented on
Oct 3, 2024 • 0 new comments -
provide an explicit list of cell barcodes to whitelist?
#642 commented on
Oct 3, 2024 • 0 new comments -
Dedup errors if input BAM file is empty
#624 commented on
Oct 3, 2024 • 0 new comments