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@SciLifeLab @NationalGenomicsInfrastructure @nf-core @nucleotidy

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Python tool for converting files and office documents to Markdown.

Python 28,520 1,119 Updated Dec 21, 2024

A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.

Rust 23 3 Updated Dec 4, 2024

a rust library for high throughput binary encoding of genomic sequences

Rust 8 Updated Dec 4, 2024

muon is a multimodal omics Python framework

Python 223 31 Updated Dec 17, 2024
Nextflow 2 Updated Aug 25, 2023

The database for modern applications. Common use cases: knowledge graphs for AI, fraud detection, personalization, and search. Built and maintained by @HypermodeInc.

Go 20,551 1,507 Updated Dec 27, 2024
Rust 9 Updated Dec 21, 2024

🙈 Volkswagen detects when your tests are being run in a CI server, and makes them pass.

JavaScript 14,942 240 Updated Dec 14, 2023

Framework for building performant command line applications and developer tools.

Rust 87 8 Updated Dec 27, 2024

Building a modern alternative to Salesforce, powered by the community.

TypeScript 24,344 2,524 Updated Dec 28, 2024

Payload is the open-source, fullstack Next.js framework, giving you instant backend superpowers. Get a full TypeScript backend and admin panel instantly. Use Payload as a headless CMS or for buildi…

TypeScript 30,619 1,922 Updated Dec 28, 2024

HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors

Rust 23 2 Updated Aug 26, 2024

Manipulating sequencing data is like playing with LEGO bricks.

Rust 3 Updated Nov 19, 2023

⚡A CLI tool for code structural search, lint and rewriting. Written in Rust

Rust 7,757 180 Updated Dec 27, 2024

🌍 A lightweight sql framework for sustainable database reliant systems

Rust 24 3 Updated Sep 5, 2024

Efficiently read and write sequencing data from Python

Python 60 9 Updated Nov 12, 2024

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Java 2 Updated Oct 16, 2024

Bit packed and well-typed biological sequences

Rust 26 3 Updated Dec 20, 2024

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

Rust 21 Updated Dec 27, 2024

configurable OSM offline router with elevation awareness, Java + Android

Java 515 126 Updated Dec 14, 2024

Automagically reverse-engineer REST APIs via capturing traffic

HTML 5,148 226 Updated Dec 23, 2024

An interactive TLS-capable intercepting HTTP proxy for penetration testers and software developers.

Python 37,296 4,065 Updated Dec 28, 2024

Business intelligence as code: build fast, interactive data visualizations in SQL and markdown

JavaScript 4,671 223 Updated Dec 27, 2024

A Comprehensive Toolkit for High-Quality PDF Content Extraction

Python 6,197 399 Updated Dec 10, 2024

Distributed LLM and StableDiffusion inference for mobile, desktop and server.

Rust 2,682 144 Updated Oct 23, 2024

Minimalist ML framework for Rust

Rust 16,146 990 Updated Dec 24, 2024

Example genomics data for tool developers

Shell 95 2 Updated Jul 7, 2024

Open Source alternative to Algolia + Pinecone and an Easier-to-Use alternative to ElasticSearch ⚡ 🔍 ✨ Fast, typo tolerant, in-memory fuzzy Search Engine for building delightful search experiences

C++ 21,596 670 Updated Dec 27, 2024

A fast tool to convert any website into LLM-ready markdown data. Built by https://supermemory.ai

TypeScript 989 80 Updated Jul 21, 2024

3D Visualization of an GPT-style LLM

TypeScript 4,199 462 Updated Aug 24, 2024
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