Skip to content

Tags: Michelle-Pena/bac-genomics-scripts

Tags

cdd2cog-v0.2

Toggle cdd2cog-v0.2's commit message
cdd2cog v0.2 NCBI FASTA header

adapted to new NCBI FASTA header format for CDD RPS-BLAST+ output

trunc_seq-v0.2

Toggle trunc_seq-v0.2's commit message
trunc_seq v0.2 with README

merged functionality of 'trunc_seq' and 'run_trunc_seq' in one script,
output for single file input via STDOUT, results dir for fof input '-r',
POD and pod2usage, autodie, Getopt::Long, '-o' output format,
version switch, remove filepaths and skip empty/comment lines from fof input,
check and warn if multi-seq file as input

trunc_seq-v0.1

Toggle trunc_seq-v0.1's commit message
trunc_seq v0.1; with run_trunc_seq.pl wrapper

bovine_ecoli_mastitis

Toggle bovine_ecoli_mastitis's commit message
Update main README and trunc_seq README

new revcom_seq and trunc_seq info,
updated links and author info,
minor update to trunc_seq README

revcom_seq-v0.2

Toggle revcom_seq-v0.2's commit message
revcom_seq v0.2 with README

fixed bug for multi-seq files, POD and pod2usage, autodie, Getopt::Long,
options -i and -o for input/output formats, version switch,
input and output via STDIN and STDOUT

revcom_seq-v0.1

Toggle revcom_seq-v0.1's commit message
revcom_seq v0.1

prot_finder-v0.7.1

Toggle prot_finder-v0.7.1's commit message
prot_finder v0.7.1; minor README.md typo

po2group_stats-v0.1.3

Toggle po2group_stats-v0.1.3's commit message
po2group_stats v0.1.3

group name file system conformity check
minor changes to adapt to binary_group_stats.pl v0.1

po2group_stats-v0.1.2

Toggle po2group_stats-v0.1.2's commit message
po2group_stats v0.1.2; typo in fatal error message

prot_finder-v0.7

Toggle prot_finder-v0.7's commit message
prot_finder v0.7

prot_binary_matrix v0.6
    adapted to prot_finder.pl v0.7 output
    included POD and pod2usage
    removed option -input to accept prot_finder.pl output as STDIN or file as argument
    removed option -collective and output now to STDOUT
    option -separate output now in a result_dir, new option -dir_result
    new option -locus_tag to use locus_tag prefix instead of subject organism
    default output tsv, new option -csv for csv output
adapted README for all prot_finder v0.7 changes