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Issues list

How do I analyze a Seurat object?
#94 by jmzhang1911 was closed Apr 19, 2024
2
Errors when running a conditional analysis on level 2 data bug
#93 by JoshHarveyGit was closed Apr 8, 2024
1
Keep popular fails with duplicate gene names bug
#92 by rbutleriii was closed Apr 8, 2024
7
How can I extract a list of genes that drive the (significant) enrichment for a particular cell type? question
#90 by KevinMarinus was closed Dec 21, 2023
6
rworkflows: Set docker_registry: docker.io GitHub Actions
#89 by bschilder was closed Nov 3, 2023
@bschilder
Dendrogram not reordering cell types in plot bug
#88 by Al-Murphy was closed Oct 31, 2023
@Al-Murphy
1
could not find function "read_celltype_data"
#87 by ashrma314 was closed Oct 31, 2023
14
generate_bootstrap_plots gives error "in check_ewce_genelist_inputs" bug
#85 by SuMi300 was closed Nov 3, 2023
5
GHA Linux: deploy website GitHub Actions
#84 by bschilder was closed Oct 23, 2023
@bschilder
1
Remove dead branches enhancement
#83 by bschilder was closed May 11, 2023
@bschilder
1
generate_bootstrap_plots gives error "in check_ewce_genelist_inputs" invalid
#82 by SuMi300 was closed May 11, 2023
1
Error using DESeq2 Wald test for drop_uninformative_genes() bug
#81 by cyouh95 was closed May 11, 2023
@bschilder
2
background not appropriate when the sct_data was previously converted from another species. bug
#80 by bschilder was closed Apr 3, 2023
@bschilder
3
Driver gene identification enhancement
#77 by forrestzhaosen was closed Apr 3, 2023
@bschilder
15
Extracting genes driving the enrichment and their mean bootstrap expression
#76 by iscastanho was closed Mar 9, 2023
3
Issue with background gene lists and orthogene bug
#75 by Al-Murphy was closed Aug 16, 2022
@Al-Murphy
2
EWCE::standardise_ctd: not enforcing "specificity_quantiles" matrix bug
#74 by bschilder was closed May 11, 2023
@bschilder
4
standardise_ctd: matrices not getting converted to sparse bug
#73 by bschilder was closed Jul 22, 2022
@bschilder
1
filter_ctd_genes: handle new CTD format bug
#72 by bschilder was closed Jul 22, 2022
@bschilder
Appropiate background genes for GC & length correction bug
#71 by xoelmb was closed Jul 22, 2022
@bschilder
8
Cannot install EWCE > 1.2 with R 4.1 or R 4.2 (incompatible dependencies)
#70 by iscastanho was closed Jul 6, 2022
4
genelistSpecies not inherited by prepare_genesize_control_network() in bootstrap_enrichment_test() bug
#69 by RHReynolds was closed Jun 21, 2022
3
generate_celltype_data with raw or SCTransformed data
#68 by artemisiat was closed Jun 16, 2022
4
Proportional expression of individual hit genes
#67 by h1hui was closed May 18, 2022
1
Error with generate_bootstrap_plots bug
#66 by h1hui was closed May 18, 2022
3
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