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@PytorchConnectomics

Pytorch Connectomics

Open Source Toolbox for Brain Microscopy Image Segmentation

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  1. em_util em_util Public

    toolbox utility functions

    Python 10 4

  2. MitoEM-challenge MitoEM-challenge Public

    starter code for mitoEM ISBI2021 Challenge

    Jupyter Notebook 7

  3. AxonEM-challenge AxonEM-challenge Public

    utility code for AxonEM challenge

    Python 7 1

  4. SynAnno SynAnno Public

    A tool for proofreading and refining synaptic polarity annotations in electron microscopy volumes.

    Python 7 1

  5. snemi3d-gc snemi3d-gc Public

    Grand Challenge evaluation repo for SNEMI3D

    Python 2

  6. em_erl em_erl Public

    Evaluation script for expected run length (ERL)

    Python 2

Repositories

Showing 10 of 21 repositories
  • em_util Public

    toolbox utility functions

    PytorchConnectomics/em_util’s past year of commit activity
    Python 10 MIT 4 0 0 Updated Jan 23, 2025
  • SynAnno Public

    A tool for proofreading and refining synaptic polarity annotations in electron microscopy volumes.

    PytorchConnectomics/SynAnno’s past year of commit activity
    Python 7 MIT 1 6 2 Updated Jan 21, 2025
  • pytc-deploy Public
    PytorchConnectomics/pytc-deploy’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 20, 2025
  • vesicleEM Public
    PytorchConnectomics/vesicleEM’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 9, 2025
  • em_erl Public

    Evaluation script for expected run length (ERL)

    PytorchConnectomics/em_erl’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Oct 29, 2024
  • em_agglo Public
    PytorchConnectomics/em_agglo’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2024
  • pytc-client Public
    PytorchConnectomics/pytc-client’s past year of commit activity
    JavaScript 0 1 6 1 Updated Aug 12, 2024
  • em_seg Public

    EM segment library and tutorials

    PytorchConnectomics/em_seg’s past year of commit activity
    Python 1 0 0 0 Updated Aug 6, 2024
  • Anatomics-MLT Public
    PytorchConnectomics/Anatomics-MLT’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 29, 2024
  • pytorch_connectomics Public Forked from zudi-lin/pytorch_connectomics

    PyTorch Connectomics: segmentation toolbox for EM connectomics

    PytorchConnectomics/pytorch_connectomics’s past year of commit activity
    Python 0 MIT 77 0 0 Updated Apr 3, 2024
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