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  • aoc24 Public

    Rust Updated Dec 7, 2024

  • minimap2-rs Public

    Forked from jguhlin/minimap2-rs

    Rust bindings to minimap2 library

    Rust Other Updated Nov 26, 2024

  • fastalign Public

    Super fast multiple sequence alignments against a reference sequence.

    Rust 1 Updated Nov 25, 2024

  • hydrasim Public

    Forked from rmcolq/hydrasim

    Hybrid metagenome simulator

    Nextflow Updated Oct 18, 2024

  • kractor Public

    Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.

    Rust 6 MIT License Updated Sep 20, 2024

  • realtime-train-display Public

    Display realtime train depature information from any UK station using an SSD1322 OLED display and a Raspberry Pi zero.

    Python Updated Aug 25, 2024

  • hashfasta Public

    Quickly compute checksums for sequence data considering nucleotide sequences only

    Rust 1 Updated Jul 28, 2024

  • ambigviz Public

    Identify and plot ambiguous nucleotide bases at given positions from a BAM file.

    Rust Updated Jul 3, 2024

  • fastbac Public

    fast neighbor joining trees for bacterial assemblies

    Nextflow Updated Apr 21, 2024

  • fatcat Public

    A paged, pretty printer for viewing FASTQ files in the terminal.

    Rust 1 Updated Apr 10, 2024

  • pico-home-monitor Public

    Micropython implementation of networked tempetature/humidity sensor using a BME280 and pi pico microcontroller.

    Python Updated Dec 2, 2023

  • adventofcode2023 Public

    Python Updated Dec 2, 2023

  • spotify-art Public

    Small webapp to analyse your spotify data, developed using Flask and P5js.

    Python Updated Sep 16, 2023

  • viralrecon-artic-1.3.0 Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow MIT License Updated Apr 11, 2023

  • pico_wifi Public

    A MicroPython module written for the raspberry pi pico to streamline the connection to a wireless network.

    Python Updated Jan 12, 2023

  • adventofcode2022 Public

    Python Updated Dec 7, 2022

  • sars-cov-2-genomics Public

    Forked from cambiotraining/sars-cov-2-genomics

    Course materials for an introduction to SARS-CoV-2 sequencing data analysis

    CSS Updated Sep 5, 2022

  • ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow GNU Affero General Public License v3.0 Updated May 27, 2022

  • miR-Search Public

    Python Updated Jul 29, 2021

  • Asteroids Public

    Asteroids game in javascript

    JavaScript Updated Jan 8, 2017