Convert GFF, fastas, annotation table and species name into Genbank.

Webserver and command line tool for annotating engineered plasmids

Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

Repository for the NGS summer course at Aarhus university

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

R package for analysis of isoform-diverse transcript datasets

Repository for CRISPR-PLANT version 2 pipeline

Full JavaScript-based assessment tool for targeted sequencing data of genome-edited samples.

Examining toolkit of potential off-target sites via Cas-OFFinder

Pairwise Sequence Alignment Library

A tidyverse and grammar of graphics powered line traces visualizer

Genome-wide Efficient Mixed Model Association

programs for k-mer analysis

Automatically exported from code.google.com/p/cdhit

A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Free responsive one page portfolio template

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Example notebooks of pyCircos

Structural variant toolkit for VCFs

A tool for simulating random mutations in any genome

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

A browser extension to provide various AI helper functions in Jupyter Notebooks, powered by ChatGPT.

Documentation for vcfR

tools for adding mutations to existing .bam files, used for testing mutation callers