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Commits on Aug 11, 2023

• Check note fix

  

  jasenfinch

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  e0da3ff

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• ensure the spectral binning method uses file indexes

  

  jasenfinch

  committed
  081d133

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• Use file index to plot chromatograms

  

  jasenfinch

  committed
  07fc678

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• use file index to calculate the bin list and metrics

  

  jasenfinch

  committed
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• Add file indexes to headers in getHeaders() return

  

  jasenfinch

  committed
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• Ensure getPeaks() returns sample index

  

  jasenfinch

  committed
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• ensure detectInfusionScans() can handle duplicated file names

  

  jasenfinch

  committed
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Commits on Apr 11, 2022

• fix calculation of quartiles in plotTIC()

  

  jasenfinch

  committed
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Commits on Nov 11, 2021

• test fix

  

  jasenfinch

  committed
  b50e212

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• reduced size and improved theme of plotBin()

  

  jasenfinch

  committed
  6b89ea3

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• fixed caption in chromatogram plotting functions

  

  jasenfinch

  committed
  573bc31

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• reduced size and improved theme of chromatogram plotting functions

  

  jasenfinch

  committed
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• reduced size and improved theme of plotFingerprint() output

  

  jasenfinch

  committed
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• improved theme and reduced object size of plotPurity() and plotCentrality()

  

  jasenfinch

  committed
  6a698e5

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• improved theme of plotTIC()

  

  jasenfinch

  committed
  0cc8891

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• reduced the size of the returned plot object from plotTIC()

  

  jasenfinch

  committed
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Commits on Nov 4, 2021

• fixed performance loss during bin metric calculation caused by binning dp retrieval

  

  jasenfinch

  committed
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Commits on Sep 29, 2021

• updated pkgdown site

  

  jasenfinch

  committed
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• fix for file header gathering iostream error for large data sets. File headers now initially written to a temporary directory and then gathered rather than accessing the files a second time using mzR

  

  jasenfinch

  committed
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• the relevant documentation examples now use the in-package example data file

  

  jasenfinch

  committed
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• renamed binMeasures file to binMetrics

  

  jasenfinch

  committed
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Commits on Sep 27, 2021

• all examples now use the BdistachyonTechnical data set from metaboData

  

  jasenfinch

  committed
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Commits on Sep 1, 2021

• Enabled custom specification of binning decimal places by the use of the binner_dp global option or BINNER_DP environment variable. Added relevant tests and documentation

  

  jasenfinch

  committed
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Commits on Aug 3, 2021

• check and test fixes on windows

  

  jasenfinch

  committed
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Commits on Mar 24, 2021

• removed the potential for errors during building of the intensity matrices if identical accurate m/z are retrieved for a bin

  

  jasenfinch

  committed
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Commits on Mar 5, 2021

• alterations to console messages

  

  jasenfinch

  committed
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• removed calls to mzR::close

  

  jasenfinch

  committed
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Commits on Feb 17, 2021

• file connection correctly closed in detectInfusionScans

  

  jasenfinch

  committed
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• close file connection for file header retrieval

  

  jasenfinch

  committed
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Commits on Feb 5, 2021

• mzML file connection now closed after peak information read

  

  jasenfinch

  committed
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• correction to console output

  

  jasenfinch

  committed
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Commits on Dec 7, 2020

• singleSample console output fix

  

  jasenfinch

  committed
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• Fixed Binalysis object creation date bug. Documentation type fixes

  

  jasenfinch

  committed
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• tidied variable names in internal methods spectralBinning and ss

  

  jasenfinch

  committed
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• added console ouput for processing steps to binneRlyse and singleSample

  

  jasenfinch

  committed
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