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Commits on Jul 12, 2022

• minor: bwa mem mappability

  amcpherson

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  35df34e

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Commits on Jun 9, 2022

• build: numpy version

  amcpherson

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  e6d23a6

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• build: conda version bump

  amcpherson

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• reference: new grch38 1kg reference panel

  amcpherson

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• bugfix: account for chromosome names with ':'

  amcpherson

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Commits on Jun 2, 2022

• Update README.md

  amcpherson

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Commits on Jun 1, 2022

• build: explicit conda deps and develop --no-deps to allow setup.py to run in conda build without installing install_requires

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• build: numpy version bump

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• build: dockerfile update

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• minor: haplotype block inference unit test

  amcpherson

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Commits on May 28, 2022

• fix: allow chr prefix or not for inputs bams and breakpoints

  amcpherson

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Commits on May 27, 2022

• feature: grch38 reference genome

  amcpherson

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Commits on Feb 18, 2022

• bugfix: only primary alignments considered, retry

  amcpherson

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Commits on Feb 17, 2022

• bugfix: only primary alignments considered

  amcpherson

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• minor: readme

  amcpherson

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Commits on Jan 11, 2022

• unauthenticated access on git protocol not allowed starting 11 Jan 2022 (#17)

  diljotgrewal

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Commits on Apr 22, 2021

• tuning: fit now consumes more memory

  amcpherson

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• params: previous max copy number too low

  amcpherson

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Commits on Mar 23, 2021

• minor: option to keep is_duplicate mapping_quality cols

  amcpherson

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  c8e5d6c

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Commits on Dec 12, 2020

• docs: readme pip and conda

  amcpherson

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• build: improved numpy checking and include all files in dist

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• minor: typing in cython

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• upgrade: bokeh compatibility for viewer

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Commits on Dec 11, 2020

• build: pip build scripts

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• build: specific numpy version

  amcpherson

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  b8b9d4b

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• improvement: fix for weighted density and improved ploidy plots

  amcpherson

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Commits on Dec 9, 2020

• build: install_requires in setup.py

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• minor: improvements to write results

  amcpherson

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• remixt: visualize fix

  amcpherson

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Commits on Sep 20, 2020

• env: requirements file

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Commits on Aug 13, 2020

• config: update max ploidy and copy number by default

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Commits on Jul 13, 2020

• minor: switched to s3

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Commits on Jun 4, 2020

• build: version bump

  diljotgrewal

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• bugfix: seed for shapeit create graph

  amcpherson

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Commits on Apr 8, 2020

• minor: python 3 updates

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