Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Oct 17, 2024

• minor: chrX v2 url for grch38 1kg

  amcpherson

  authored
  9073fb6

  Copy full SHA for 9073fb6

Commits on Oct 16, 2024

• minor: dont exception when calling remixt with no args

  amcpherson

  committed
  48412f5

  Copy full SHA for 48412f5

Commits on Jul 26, 2022

• switched to yaml safe load, less memory usage in infer haps, documentation update (#25)

  Show description for 8f462fe
  diljotgrewal

  authored
  8f462fe

  Copy full SHA for 8f462fe

Commits on Jul 13, 2022

• bugfix: fix for chromosome check

  amcpherson

  committed
  1310c1c

  Copy full SHA for 1310c1c

• bugfix: order chromosomes correctly

  amcpherson

  committed
  319e2c2

  Copy full SHA for 319e2c2

• * feature: check chr prefix with asserts and failures when there is a mismatch (#24)

  amcpherson

  authored
  07a0b40

  Copy full SHA for 07a0b40

• bugfix: modify chromosome names for gap table during ref data generation

  amcpherson

  committed
  3eb61fb

  Copy full SHA for 3eb61fb

• optimization: shapeit4 generate bingraph then sample

  amcpherson

  committed
  63cf999

  Copy full SHA for 63cf999

Commits on Jul 12, 2022

• minor: bwa mem mappability

  amcpherson

  committed
  35df34e

  Copy full SHA for 35df34e

Commits on Jun 9, 2022

• build: numpy version

  amcpherson

  committed
  e6d23a6

  Copy full SHA for e6d23a6

• build: conda version bump

  amcpherson

  committed
  e659d88

  Copy full SHA for e659d88

• reference: new grch38 1kg reference panel

  amcpherson

  committed
  4e0ea24

  Copy full SHA for 4e0ea24

• bugfix: account for chromosome names with ':'

  amcpherson

  committed
  2485b35

  Copy full SHA for 2485b35

Commits on Jun 2, 2022

• Update README.md

  amcpherson

  authored
  756f0a8

  Copy full SHA for 756f0a8

Commits on Jun 1, 2022

• build: explicit conda deps and develop --no-deps to allow setup.py to run in conda build without installing install_requires

  amcpherson

  committed
  17d4a85

  Copy full SHA for 17d4a85

• build: numpy version bump

  amcpherson

  committed
  9224ad4

  Copy full SHA for 9224ad4

• build: dockerfile update

  amcpherson

  committed
  2963679

  Copy full SHA for 2963679

• minor: haplotype block inference unit test

  amcpherson

  committed
  c6311f7

  Copy full SHA for c6311f7

Commits on May 28, 2022

• fix: allow chr prefix or not for inputs bams and breakpoints

  amcpherson

  committed
  0f4d493

  Copy full SHA for 0f4d493

Commits on May 27, 2022

• feature: grch38 reference genome

  amcpherson

  committed
  f30668e

  Copy full SHA for f30668e

Commits on Feb 18, 2022

• bugfix: only primary alignments considered, retry

  amcpherson

  committed
  57405e4

  Copy full SHA for 57405e4

Commits on Feb 17, 2022

• bugfix: only primary alignments considered

  amcpherson

  committed
  83ceafd

  Copy full SHA for 83ceafd

• minor: readme

  amcpherson

  committed
  1adb5df

  Copy full SHA for 1adb5df

Commits on Jan 11, 2022

• unauthenticated access on git protocol not allowed starting 11 Jan 2022 (#17)

  diljotgrewal

  authored
  1d50bb2

  Copy full SHA for 1d50bb2

Commits on Apr 22, 2021

• tuning: fit now consumes more memory

  amcpherson

  committed
  f3d791d

  Copy full SHA for f3d791d

• params: previous max copy number too low

  amcpherson

  committed
  db5e9a4

  Copy full SHA for db5e9a4

Commits on Mar 23, 2021

• minor: option to keep is_duplicate mapping_quality cols

  amcpherson

  committed
  c8e5d6c

  Copy full SHA for c8e5d6c

Commits on Dec 12, 2020

• docs: readme pip and conda

  amcpherson

  committed
  156c1d6

  Copy full SHA for 156c1d6

• build: improved numpy checking and include all files in dist

  amcpherson

  committed
  8757e7a

  Copy full SHA for 8757e7a

• minor: typing in cython

  amcpherson

  committed
  fce5c10

  Copy full SHA for fce5c10

• upgrade: bokeh compatibility for viewer

  amcpherson

  committed
  1a18774

  Copy full SHA for 1a18774

Commits on Dec 11, 2020

• build: pip build scripts

  amcpherson

  committed
  ce059da

  Copy full SHA for ce059da

• build: specific numpy version

  amcpherson

  committed
  b8b9d4b

  Copy full SHA for b8b9d4b

• improvement: fix for weighted density and improved ploidy plots

  amcpherson

  committed
  e7e1f0e

  Copy full SHA for e7e1f0e

Commits on Dec 9, 2020

• build: install_requires in setup.py

  amcpherson

  committed
  f430655

  Copy full SHA for f430655

Pagination

Previous

Next