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A list of manuscripts/tools using diffusion on biological enttieis

96 6 Updated Oct 5, 2023

Contextual Analysis Tools for cryoET and subtomogram averaging

Jupyter Notebook 25 3 Updated Mar 28, 2025

Les codes d'analyses lié à l'article molecular modelling of MCTP

Jupyter Notebook 2 Updated Jan 27, 2025
Python 191 40 Updated Nov 21, 2024
C++ 80 17 Updated Sep 25, 2024

Official code of the paper Exploring the knowledge of an outstanding protein to protein interaction transformer

Jupyter Notebook 7 1 Updated Mar 18, 2024
Python 4 4 Updated Oct 21, 2024

Official github repository of public UnityMol source code releases -- more details at http://unitymol.sourceforge.net

C# 63 23 Updated Jul 19, 2022

Identifying peptide-receptor interactions using AlphaFold-Multimer

Jupyter Notebook 26 6 Updated Sep 12, 2023

DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design

Python 322 45 Updated Apr 17, 2024

This package contains deep learning models and related scripts for RoseTTAFold

Python 2,121 444 Updated Feb 15, 2024

OmegaFold Release Code

Python 574 82 Updated Dec 12, 2022

This project hint to creat a pipeline that sonifise a preteins contact matrix in an understanable and informative format

Python 1 Updated Aug 24, 2022

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

Python 699 116 Updated Nov 26, 2023

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python 2,951 574 Updated Feb 24, 2025
Jupyter Notebook 38 4 Updated Jan 7, 2025

A python toolkit for analysing membrane protein-lipid interactions.

Python 63 29 Updated Apr 17, 2023

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Python 1,404 698 Updated Mar 21, 2025
Python 1 Updated Nov 15, 2023

PeersGrader is an opensource webapp to ease the organisation of peer grading activities by teachers for classes.

JavaScript 1 Updated Jun 6, 2020

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Jupyter Notebook 550 158 Updated Aug 12, 2024

PeersGrader is an opensource webapp to ease the organisation of peer grading activities by teachers for classes.

JavaScript 4 2 Updated May 27, 2021

The next step is an open source colonisation game made with Unity 5 where the player will have to create/manage a colony on the planet Mars

C# 5 2 Updated Nov 23, 2015

Unreal Engine 4 Action RPG type game starter kit.

C++ 1,022 326 Updated Feb 18, 2023