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| ^.*\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
| .git | ||
| .travis.yml | ||
| appveyor.yml |
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| src/*.o | ||
| src/*.so | ||
| .DS_Store | ||
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| # R for travis: see documentation at https://docs.travis-ci.com/user/languages/r | ||
|
|
||
| language: R | ||
| sudo: false | ||
| cache: packages | ||
| sudo: required | ||
| r_binary_packages: | ||
| - lars | ||
| - mixtools | ||
| - caret | ||
| - e1071 | ||
| - ica | ||
| - fpc | ||
| - ape | ||
| - igraph | ||
| - dplyr | ||
| - irlba | ||
| - reshape2 | ||
| - gdata | ||
| - compositions | ||
| - dtw | ||
| - plotly | ||
| - httr | ||
| - tidyr | ||
| - ranger | ||
| warnings_are_errors: false | ||
| dist: trusty |
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| Package: Seurat | ||
| Version: 2.0.0.900 | ||
| Date: 07/17/17 | ||
| Title: Seurat : R toolkit for single cell genomics | ||
| Description: Seurat : R toolkit for single cell genomics. | ||
| Author: Rahul Satija | ||
| Maintainer: Satija Lab <[email protected]> | ||
| URL: http://www.satijalab.org/seurat | ||
| Version: 2.0.1 | ||
| Date: 2017-08-18 | ||
| Title: Tools for Single Cell Genomics | ||
| Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details. | ||
| Authors@R: c( | ||
| person(given = 'Rahul', family = 'Satija', email = '[email protected]', role = 'aut'), | ||
| person(given = 'Andrew', family = 'Butler', email = '[email protected]', role = 'aut'), | ||
| person(given = 'Paul', family = 'Hoffman', email = '[email protected]', role = c('aut', 'cre')), | ||
| person(given = 'Jeff', family = 'Farrell', email = '[email protected]', role = 'ctb'), | ||
| person(given = 'Shiwei', family = 'Zheng', email = '[email protected]', role = 'ctb'), | ||
| person(given = 'Christoph', family = 'Hafemeister', email = '[email protected]', role = 'ctb'), | ||
| person(given = 'Patrick', family = 'Roelli', email = '[email protected]', role = 'ctb') | ||
| ) | ||
| URL: http://www.satijalab.org/seurat, https://github.com/satijalab/seurat | ||
| BugReports: https://github.com/satijalab/seurat/issues | ||
| Depends: | ||
| R (>= 3.2.0), | ||
| ggplot2, | ||
| cowplot, | ||
| Matrix, | ||
| SystemRequirements: Java (>= 1.6) | ||
| Imports: | ||
| methods, | ||
|
|
@@ -31,35 +40,35 @@ Imports: | |
| dplyr, | ||
| RColorBrewer, | ||
| MASS, | ||
| Matrix, | ||
| irlba, | ||
| reshape2, | ||
| gridExtra, | ||
| gplots, | ||
| gdata, | ||
| Rcpp, | ||
| RcppEigen, | ||
| RcppProgress, | ||
| tclust, | ||
| ranger, | ||
| compositions, | ||
| NMF, | ||
| NMOF, | ||
| dtw, | ||
| SDMTools, | ||
| plotly, | ||
| enrichR, | ||
| diffusionMap, | ||
| Hmisc, | ||
| httr, | ||
| tidyr | ||
| tidyr, | ||
| ggjoy | ||
| LinkingTo: Rcpp, RcppEigen, RcppProgress | ||
| License: GPL-3 | ||
| Collate: | ||
| License: GPL-3 | file LICENSE | ||
| LazyData: true | ||
| Collate: | ||
| 'RcppExports.R' | ||
| 'seurat.R' | ||
| 'cluster_determination.R' | ||
| 'cluster_determination_internal.R' | ||
| 'cluster_validation.R' | ||
| 'data.R' | ||
| 'deprecated_functions.R' | ||
| 'differential_expression.R' | ||
| 'differential_expression_internal.R' | ||
|
|
@@ -79,7 +88,6 @@ Collate: | |
| 'preprocessing_internal.R' | ||
| 'printing_utilities.R' | ||
| 'scoring.R' | ||
| 'seuratFxns.R' | ||
| 'snn.R' | ||
| 'spatial.R' | ||
| 'spatial_internal.R' | ||
|
|
||
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