RB represses cohesin-dependent loop formation and safeguards E2F-independent transcription

MutSig2CV for noncoding analysis as run for the PCAWG drivers paper (Rheinbay et al. 2020)

Chromosome polymer simulations and in silico capture experiments

MutSig2CV from Lawrence et al. 2014

A computational method for inferring transcriptional regulators associated with genome-wide differential chromatin interactions.

Comparison of Hi-C Experiments using Structural Similarity.

Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a …

SeroHet is a MATLAB-based software to study signatures of interpatient seroprotein heterogeneity in cancer patients.