GPU beamsearch decoding for nanopore basecalling

DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.

Linux kernel source tree

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et…

Inference Llama 2 in one file of pure C

PBS scripts for running nanopore genomics analyses on NCI Gadi

A library and tool for accessing remote BLOW5 files.

Visualise and analyse nanopore (ONT) raw signals

Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output

Wrapper to read fast5, slow5, blow5 and pod5 files.

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

A simplified version of Dorado built on top of S/BLOW5 format.

The buttery eel - a slow5 guppy/dorado basecaller wrapper

Predictive kmer models for development use

a tool for simulating nanopore raw signal data

Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)

A simple toolkit for manipulating nanopore signal data

A LibTorch Basecaller for Oxford Nanopore Reads

crab go snap snap

Signal-level algorithms for MinION data

Lightweight job scheduler and daemon for nanopore data processing on a mini-cluster

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Hybrid error correction of long reads using colored de Bruijn graphs

READONLY: Auto-generated mirror for https://github.com/marvinpinto/actions/tree/master/packages/automatic-releases

A streaming method for mapping nanopore raw signals

Adaptive Banded Event Alignment

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.