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Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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  • slow5tools Public

    Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

    C 98 6 MIT License Updated Nov 2, 2024

  • nci-scripts Public

    PBS scripts for running nanopore genomics analyses on NCI Gadi

    Shell 4 4 MIT License Updated Oct 8, 2024

  • slow5lib Public

    slow5lib is a software library for reading & writing SLOW5 files.

    C 41 4 MIT License Updated Oct 3, 2024

  • sigtk Public

    A simple toolkit for manipulating nanopore signal data

    C 18 3 MIT License Updated Sep 24, 2024

  • f5c Public

    Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

    C 148 26 MIT License Updated Sep 23, 2024

  • squigulator Public

    a tool for simulating nanopore raw signal data

    simulator nanopore signal blow5 slow5
    C 62 3 MIT License Updated Sep 20, 2024

  • sigfish Public

    Align raw nanopore signals to a reference using subsequence DTW

    C 7 5 MIT License Updated Sep 12, 2024

  • slow5 Public

    SLOW5 Ecosystem Website

    1 1 MIT License Updated Jul 31, 2024

  • seq Public

    Publicly available nanopore datasets (with raw data)

    nanopore
    5 Updated Jun 26, 2024

  • RawHash Public

    Forked from CMU-SAFARI/RawHash

    RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computati…

    C 3 GNU General Public License v3.0 Updated May 7, 2024

  • nanopolish-arm Public

    Forked from jts/nanopolish

    Signal-level algorithms for MinION data

    C++ MIT License Updated Jan 17, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Nov 24, 2023

  • buttery-eel Public

    Forked from Psy-Fer/buttery-eel

    The buttery eel - a slow5 guppy basecaller wrapper

    Shell MIT License Updated Oct 18, 2023

  • biorand Public

    My random bioinformatics tools

    MATLAB MIT License Updated Oct 3, 2023

  • slow5specs Public

    Specification of the SLOW5 file format

    3 Updated Aug 14, 2023

  • nanopress Public

    Forked from sashajenner/honours

    Lossless compression for nanopore DNA signal data

    C Updated Jul 1, 2023

  • slorado Public

    Forked from BonsonW/slorado

    A simplified version of Dorado built on top of S/BLOW5 format.

    C++ 1 Other Updated Jun 17, 2023

  • rslow5 Public

    R wrapper for slow5lib

    nanopore blow5 slow5
    C 2 MIT License Updated Apr 17, 2023

  • sg-nex-data Public

    Forked from GoekeLab/sg-nex-data

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    Updated Mar 3, 2023

  • slowION Public

    a benchmark tool that can simulate data rates of a nanopore sequencer

    C 2 MIT License Updated Jan 20, 2023

  • slow5-template-x Public template

    A template that demonstrates the advanced use of slow5lib

    C MIT License Updated Dec 21, 2022

  • SquiggleKit Public

    Forked from Psy-Fer/SquiggleKit

    SquiggleKit: A toolkit for manipulating nanopore signal data

    Python MIT License Updated Dec 6, 2022

  • slow5-template Public template

    A template repository that demonstrates how slow5lib can be used to develop a new nanopore tool

    C MIT License Updated Dec 6, 2022

  • RawMap Public

    Forked from harisankarsadasivan/RawMap

    Complements Minimap2 for a fast and efficient Read-Until pipeline

    C++ MIT License Updated Nov 25, 2022

  • hasindu2008.github.io Public

    SCSS MIT License Updated Nov 4, 2022

  • hlib Public

    Miscellaneous helpers

    C 1 MIT License Updated Oct 22, 2022

  • OpenDBA Public

    Forked from nodrogluap/OpenDBA

    GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

    C++ Other Updated Aug 10, 2022

  • Optimised-Read-Until-API Public

    Forked from brianzhang2101/Optimised-Read-Until-API
    C++ Updated Jul 26, 2022

  • awesome-nanopore Public

    Forked from GoekeLab/awesome-nanopore

    A curated list of awesome nanopore analysis tools.

    MIT License Updated Jun 15, 2022

  • sigmap Public

    Forked from haowenz/sigmap

    A streaming method for mapping nanopore raw signals

    C++ GNU General Public License v3.0 Updated Aug 27, 2021