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Commits on May 30, 2018

• wrote warning about rare tri-allelic/SNPextractor bug

  vincentrose88

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  7274b44

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Commits on Sep 19, 2017

• added mismatch in colnames debugger

  vincentrose88

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  9226b27

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Commits on Aug 1, 2017

• updated R-path

  

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  efb2059

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Commits on May 15, 2017

• added a print out for ambious SNPs with MAF close to 50%

  

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Commits on May 9, 2017

• added a SNPextractor condition to not extracted

  

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  486b719

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Commits on Apr 20, 2017

• more debuggin from SNPextractor stuff

  

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  7063e58

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Commits on Apr 19, 2017

• more debug

  

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  9fa4508

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• fixed a bug with LDprune merging for SNPextractor and added a header check for SNP-list

  

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Commits on Apr 18, 2017

• added error message for missing EAF when a tricky SNP is encountered, instead of giving a error message and quitting

  

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  9f41e11

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Commits on Mar 13, 2017

• updated and tested SNPextractor extraction and GRS

  

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  ac362a7

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Commits on Mar 2, 2017

• debugged SNPextractor output usage

  

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Commits on Feb 24, 2017

• added recommedation to use SNPextractor for extracting

  

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Commits on Feb 17, 2017

• added recommediation to SNPextractor

  

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  094c891

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• updated SNPout format and added the Litterature_SNPs_not_extracted file for SNPs not extracted

  

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  6692b14

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Commits on Feb 16, 2017

• added SNPout option to get genotypes after flips,

  

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Commits on Jan 25, 2017

• added a way to force the .csv file to be read with linux formatting in 1_create_(...) step. Should resolve in much less support - not a problem for the R-part of the GRS

  

  Vincent Appel

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  26c8fd7

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• updated to include path in readme

  

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  658fb9e

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• updated to include path in readme

  

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  e1cb1a4

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Commits on Jan 18, 2017

• better readme

  

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  5c0dcac

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• Merge branch 'master' of github.com:vincentrose88/GRS

  

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  1c9de5a

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• theresia and regitze bug squashing

  

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  2e0430c

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• Merge branch 'master' of https://github.com/vincentrose88/GRS

  

  Theresia Maria Schnurr

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  c5b7535

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• order matters

  

  Theresia Maria Schnurr

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  1eebeb9

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• removed online tool link as it maps to build 38

  

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  de122d5

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Commits on Jan 13, 2017

• minor bug and readme update

  

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  81748a4

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• crucial info updated

  

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  9c2179f

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Commits on Dec 19, 2016

• specfile no longer mandatory

  

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  ea10466

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• named variables made wrapper obsulute

  

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  dcf997c

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Commits on Dec 16, 2016

• updated to bcftools 1.3.1

  

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Commits on Dec 7, 2016

• debugged new AT GC extra check

  

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Commits on Dec 6, 2016

• added A/T and G/C allele special case plus added MAF command to 1.5 (used for special SNPs)

  

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  ed2d082

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• updated SNPlist example

  

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  a1e427c

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Commits on Dec 2, 2016

• normalized wGRS

  

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  97aa310

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• added weighted version

  

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  d26cf6e

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• updated READDME

  

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