Skip to content
View jbelyeu's full-sized avatar
27 followers · 3 following

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2Achievement: Starstruck

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2Achievement: Starstruck

Block or report jbelyeu

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

  • jbelyeu.github.io Public

    Github pages personal website

    CSS Updated Jan 13, 2025

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Nov 19, 2024

  • unfazed Public

    Unfazed by genomic variant phasing

    Python 26 MIT License Updated May 26, 2024

  • samplot Public

    Forked from ryanlayer/samplot

    Plot structural variant signal from a BAM/CRAM

    Python 6 1 MIT License Updated Nov 19, 2022

  • PlotCritic Public

    Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174

    Shell 11 3 MIT License Updated Aug 6, 2022

  • SV-plaudit Public

    Pipeline for structural variant image curation and analysis.

    Shell 48 2 MIT License Updated Dec 5, 2021

  • dnSV-manuscript Public

    scripts and data to replicate an analysis of de novo structural variation in CEPH-Utah and SFARI SSC cohorts

    Jupyter Notebook 4 MIT License Updated Feb 2, 2021

  • samplot_manuscript Public

    example data and commands for the figures in the samplot manuscript

    Shell Updated Oct 6, 2020

  • ggd-recipes Public

    Forked from gogetdata/ggd-recipes

    conda recipes for genomic data

    Shell MIT License Updated Aug 24, 2020

  • samplot-ml Public

    Forked from mchowdh200/samplot-ml
    Shell Updated Jul 20, 2020

  • TRF Public

    Forked from Benson-Genomics-Lab/TRF

    Tandem Repeats Finder: a program to analyze DNA sequences

    C GNU Affero General Public License v3.0 Updated Jul 1, 2020

  • ctseq Public

    Forked from ryanhmiller/ctseq

    Pipeline to analyze ctDNA data

    Python MIT License Updated May 7, 2020

  • mechanizer Public

    python script to analyze the most likely mutational mechanism of a given structural variant

    Python MIT License Updated Mar 30, 2020

  • sv_calling_nf Public

    Nextflow scripts for structural variant calling

    Nextflow Updated Sep 20, 2019

  • NAHRly Public

    Genomic copy-number variant calling on NAHR-based events

    Python 1 2 Updated Sep 6, 2019

  • XPRESSpipe Public

    Forked from XPRESSyourself/XPRESSpipe

    An alignment and analysis pipeline for RNAseq data

    Python GNU General Public License v3.0 Updated Jun 24, 2019

  • slivar Public

    Forked from brentp/slivar

    variant expressions, annotation, and filtering for great good.

    Nim MIT License Updated May 16, 2019

  • cshl2018-sv-review Public

    materials for CSHL advanced sequencing course 2018

    Shell Updated Nov 17, 2018

  • codingskilz Public

    little projects for practicing coding skills

    Python Updated Nov 8, 2018

  • SoftwareDictionary Public

    Tools for bioinformatics (including some unix tools from outside the field) as I think of/find them

    Updated Jun 9, 2017

  • wham Public

    Forked from zeeev/wham

    Structural variant detection and association testing

    C++ Other Updated May 3, 2017

  • graphite_rotation_project Public

    Version of Graphite with added code to output a path through a single graph and the reads that map to it

    C++ Updated Dec 13, 2016

  • mySelecT Public

    Forked from ridgelab/SelecT

    A genome-wide study of evolution

    Java MIT License Updated Jun 21, 2016

  • old_class_code Public

    Code from CS class projects in C++, Java, and C#, mostly.

    HTML Updated Mar 30, 2016

  • CS312 Public

    Programming projects in C# from CS 312 (BYU Spring Term 2015)

    C# Updated Mar 28, 2016

  • WorkingIgnite Public

    Working maven ignite project

    Java Updated Feb 6, 2016

  • MvnIgnite Public

    Trial code for learning Ignite

    Java Updated Feb 4, 2016

  • waterFluxScripts Public

    Scripts (written by Brandon Pickett) for statistical analysis of water flux data

    Python Updated Jul 13, 2015

  • 312Lab7TSP Public

    TSP algorithm by B&B for CS 312

    C# Updated Jun 14, 2015

  • SelecT Public

    Java version of CMS (Author is Hayden Smith, I'm helping with finishing touches)

    Java Updated Jun 12, 2015