📊 Circular and Rectangular Manhattan Plot

Re-organizing the analysis of signatures of positive selection in the Lynx lynx dataset

A tool to align fastq reads to a reference genome and process the resulting BAM file, according to our research group general protocol

Detecting Genomic Introgressions Among Lynx Lineages

Color Schemes based around artwork and the Museum of Modern Art.

paml documentation and tutorials

A Python package for testing evolutionary hypotheses in genome-wide approaches.

perSVade: personalized Structural Variation detection

A tool to extract LOH blocks from VCF, BAM and FASTA data

Tools and Utilities for msmc and msmc2

Official home of genome aligner based upon notion of Cactus graphs

Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.

Mummer alignment tool

Workflow and script for converting genomic coordinates using MUMmer output and CrossMap

Same species annotation lift over pipeline.

A repository of 60 useful data science prompts for ChatGPT

mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.

LASSI-Plus: A program to calculate haplotype frequency spectrum statistics

Likelihood-based Selective Sweep Detection

Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)