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onv1.5rc3

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Commits on May 16, 2014

• Update kraken version

  skoren

  committed
  98ae3d8

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Commits on Apr 24, 2014

• Disable skipping of mapreads and assemble steps

  skoren

  committed
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Commits on Jan 22, 2014

• Update generic import to avoid infinite loops

  skoren

  committed
  e00f1f2

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Commits on Oct 4, 2013

• Fix infinite loop with missing taxonomic ids

  skoren

  committed
  e50fe8d

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Commits on Sep 6, 2013

• Added installation for Kraken and LAP

  skoren

  committed
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• Add generic import script for tab-delimited output

  skoren

  committed
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Commits on Aug 19, 2013

• Update PhyloSift version

  skoren

  committed
  340b73f

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Commits on Jul 30, 2013

• Update installation to check for missing or out of date refseq partitions

  skoren

  committed
  fdfb451

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Commits on Jul 26, 2013

• Update import for metaphyler for latest Krona version

  skoren

  committed
  c492567

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Commits on Jan 28, 2013

• Import FCP was taking the log of 0, causing a crash

  skoren

  committed
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Commits on Nov 2, 2012

• Fix bug that was always ignoring first line even if it was not a header

  skoren

  committed
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Commits on Nov 1, 2012

• Elminate duplicates in annots file

  skoren

  committed
  2af9606

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• Remove duplicate output from annots file

  skoren

  committed
  e1e7821

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Commits on Oct 26, 2012

• Fix scores so larger ones are better than lower scores

  skoren

  committed
  83ce530

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• Add options to output annotations for propagate step

  skoren

  committed
  1b7f3dd

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Commits on Oct 24, 2012

• Update to record all sequences for which no classifications were output

  skoren

  committed
  b152d7e

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Commits on Oct 23, 2012

• Merge branch 'master' of github.com:treangen/metAMOS

  skoren

  committed
  78cb900

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• Update import to include parenthesis

  skoren

  committed
  cd7fcf0

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• Update importer for new krona version

  skoren

  committed
  166a19c

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• log transform FCP confidence values

  treangen

  committed
  849a61d

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Commits on Oct 22, 2012

• Merge branch 'master' of https://github.com/treangen/metAMOS

  treangen

  committed
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Commits on Oct 19, 2012

• merging most recent head into branch

  

  Brian Ondov

  committed
  8a8d355

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• mostly working new summary and dynamic Krona install

  

  Brian Ondov

  committed
  3ba5173

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Commits on Apr 4, 2012

• Updated phylosift installation script to add missing libraries

  skoren

  committed
  8ca5735

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Commits on Mar 27, 2012

• migrating from Amphora-2 name to PhyloSift and updating the version used by metAMOS to be current.

  koadman

  committed
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Commits on Mar 6, 2012

• Add conversion utilties for fasta to fastq conversion (to fix issue #40)

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  skoren

  committed
  646e559

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Commits on Feb 3, 2012

• Added FragGeneScan

  treangen

  committed
  e602b91

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• Added support for FragGeneScan

  treangen

  committed
  8c5a760

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Commits on Nov 17, 2011

• Update amphora conversion to remove scores

  skoren

  committed
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• Added automated download of Amphora 2 to the installation script

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  skoren

  committed
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Commits on Nov 16, 2011

• Modified createPipeline to allow arbitary combinations of files (mated/unmated, fasta/fastq), etc

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  skoren

  committed
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Commits on Nov 1, 2011

• set ftp to passive to avoid firewall issues

  treangen

  committed
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Commits on Sep 22, 2011

• HMP script for calculating coverage

  treangen

  committed
  9125740

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Commits on Sep 15, 2011

• auto-download refseq

  treangen

  committed
  2395634

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Commits on Aug 2, 2011

• minor bug

  treangen

  committed
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