mcao0404
Follow
-
knock-knock Public
Forked from jeffhussmann/knock-knocktoolkit for analyzing genome editing experiments
Python GNU General Public License v3.0 UpdatedSep 17, 2023 -
practical-statistics-for-data-scientists Public
Forked from gedeck/practical-statistics-for-data-scientistsCode repository for O'Reilly book
Jupyter Notebook GNU General Public License v3.0 UpdatedJul 10, 2023 -
seurat-wrappers Public
Forked from satijalab/seurat-wrappersCommunity-provided extensions to Seurat
R GNU General Public License v3.0 UpdatedMay 19, 2023 -
envd Public
Forked from tensorchord/envd🏕️ Reproducible development environment for AI/ML
Go Apache License 2.0 UpdatedMay 10, 2023 -
sc-type Public
Forked from IanevskiAleksandr/sc-typeHTML GNU General Public License v3.0 UpdatedNov 9, 2022 -
pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedOct 2, 2022 -
-
Code_AAV_integrations Public
Forked from calabrialab/Code_AAV_integrationsAAV integrations using RAAVioli in Ferrari, Jacob, Cesana et al, Cell Stem Cell
Python UpdatedAug 31, 2022 -
ggplot2 Public
Forked from tidyverse/ggplot2An implementation of the Grammar of Graphics in R
R Other UpdatedJun 25, 2022 -
pbmm2 Public
Forked from PacificBiosciences/pbmm2A minimap2 frontend for PacBio native data formats
Perl BSD 3-Clause Clear License UpdatedApr 19, 2022 -
scATAC-seq_notes Public
Forked from mdozmorov/scATAC-seq_notesscATAC-seq data analysis tools and papers
MIT License UpdatedMar 21, 2022 -
Sniffles Public
Forked from fritzsedlazeck/SnifflesStructural variation caller using third generation sequencing
Python MIT License UpdatedFeb 9, 2022 -
Unicycler Public
Forked from rrwick/Unicyclerhybrid assembly pipeline for bacterial genomes
C++ GNU General Public License v3.0 UpdatedJan 28, 2022 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R Other UpdatedJan 25, 2022 -
scPPIN Public
Forked from floklimm/scPPINFunctional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
HTML GNU Affero General Public License v3.0 UpdatedJul 26, 2021 -
-
gatk Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java Other UpdatedMar 8, 2021 -
longread_umi Public
Forked from SorenKarst/longread_umiShell GNU General Public License v3.0 UpdatedFeb 26, 2021 -
LongAmpseq Public
Forked from baolab-rice/LongAmpseqThe analysis for "CRISPR/Cas9 gene-editing of HSPCs from SCD patients has unintended consequences"
Python UpdatedNov 12, 2020 -
pbbioconda Public
Forked from PacificBiosciences/pbbiocondaPacBio Secondary Analysis Tools on Bioconda
BSD 3-Clause Clear License UpdatedOct 12, 2020 -
ngmlr Public
Forked from philres/ngmlrNGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
C++ MIT License UpdatedSep 24, 2020 -
OT-review Public
Forked from baolab-rice/OT-reviewBioinformatics analysis for CRSIPR/Cas9 off-target review
Python UpdatedSep 2, 2020 -
RhoTermPredict Public
Forked from MarcoDiSalvo90/RhoTermPredictPython GNU Affero General Public License v3.0 UpdatedMar 22, 2020 -
guideseq Public
Forked from aryeelab/guideseqAnalysis pipeline for the GUIDE-seq assay. For news, see:
-
Structrual-Variant-Pipeline Public
Forked from zbtbwbdb/Structrual-Variant-PipelinePython UpdatedJun 28, 2019 -
R_toruloides Public
Forked from behrimg/R_toruloidesScripts for Identification of Structrual Variants in R. touruloides
Shell GNU General Public License v3.0 UpdatedAug 7, 2016