A complete diploid human genome

RNA Velocity generalized through dynamical modeling

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A curated list of awesome nanopore analysis tools.

Code repository for O'Reilly book

An implementation of the Grammar of Graphics in R

Official code repository for GATK versions 4 and up

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

Analysis pipeline for the GUIDE-seq assay. For news, see:

The analysis for "CRISPR/Cas9 gene-editing of HSPCs from SCD patients has unintended consequences"