Fixing bugs in functions and files

.Rproj.user/02275A6F/persistent-state

@@ -1,8 +1,8 @@
 build-last-errors="[]"
 build-last-errors-base-dir="~/Library/CloudStorage/OneDrive-UniversiteitUtrecht/Postdoc/ggPlantmap/ggPlantmap/"
-build-last-outputs="[{\"type\":0,\"output\":\"==> devtools::document(roclets = c('rd', 'collate', 'namespace', 'vignette'))\\n\\n\"},{\"type\":2,\"output\":\"ℹ Updating ggPlantmap documentation\\n\"},{\"type\":2,\"output\":\"Warning: Version of roxygen2 last used with this package is 7.2.3.  You only have version 7.1.2\\n\"},{\"type\":2,\"output\":\"ℹ Loading ggPlantmap\\n\"},{\"type\":1,\"output\":\"Writing NAMESPACE\\n\"},{\"type\":1,\"output\":\"Writing XML.to.ggPlantmap.Rd\\nWriting ggPlantmap.merge.Rd\\nWriting ggPlantmap.heatmap.Rd\\nWriting NAMESPACE\\n\"},{\"type\":1,\"output\":\"Documentation completed\\n\\n\"},{\"type\":0,\"output\":\"==> R CMD INSTALL --no-multiarch --with-keep.source ggPlantmap\\n\\n\"},{\"type\":1,\"output\":\"* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’\\n\"},{\"type\":1,\"output\":\"* installing *source* package ‘ggPlantmap’ ...\\n\"},{\"type\":1,\"output\":\"** using staged installation\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** R\\n\"},{\"type\":1,\"output\":\"** data\\n\"},{\"type\":1,\"output\":\"*** moving datasets to lazyload DB\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** byte-compile and prepare package for lazy loading\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** help\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** installing help indices\\n\"},{\"type\":1,\"output\":\"*** copying figures\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** building package indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from temporary location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from final location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package keeps a record of temporary installation path\\n\"},{\"type\":1,\"output\":\"* DONE (ggPlantmap)\\n\"},{\"type\":1,\"output\":\"\"}]"
+build-last-outputs="[{\"type\":0,\"output\":\"==> devtools::document(roclets = c('rd', 'collate', 'namespace', 'vignette'))\\n\\n\"},{\"type\":2,\"output\":\"ℹ Updating ggPlantmap documentation\\n\"},{\"type\":2,\"output\":\"Warning: Version of roxygen2 last used with this package is 7.2.3.  You only have version 7.1.2\\nℹ Loading ggPlantmap\\n\"},{\"type\":1,\"output\":\"Writing NAMESPACE\\n\"},{\"type\":1,\"output\":\"Writing XML.to.ggPlantmap.Rd\\nWriting NAMESPACE\\n\"},{\"type\":1,\"output\":\"Documentation completed\\n\\n\"},{\"type\":0,\"output\":\"==> R CMD INSTALL --no-multiarch --with-keep.source ggPlantmap\\n\\n\"},{\"type\":1,\"output\":\"* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’\\n\"},{\"type\":1,\"output\":\"* installing *source* package ‘ggPlantmap’ ...\\n\"},{\"type\":1,\"output\":\"** using staged installation\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** R\\n\"},{\"type\":1,\"output\":\"** data\\n\"},{\"type\":1,\"output\":\"*** moving datasets to lazyload DB\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** byte-compile and prepare package for lazy loading\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** help\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** installing help indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** copying figures\\n\"},{\"type\":1,\"output\":\"** building package indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from temporary location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from final location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package keeps a record of temporary installation path\\n\"},{\"type\":1,\"output\":\"* DONE (ggPlantmap)\\n\"},{\"type\":1,\"output\":\"\"}]"
 compile_pdf_state="{\"tab_visible\":false,\"running\":false,\"target_file\":\"\",\"output\":\"\",\"errors\":[]}"
 files.monitored-path=""
 find-in-files-state="{\"handle\":\"\",\"input\":\"\",\"path\":\"\",\"regex\":false,\"ignoreCase\":false,\"results\":{\"file\":[],\"line\":[],\"lineValue\":[],\"matchOn\":[],\"matchOff\":[],\"replaceMatchOn\":[],\"replaceMatchOff\":[]},\"running\":false,\"replace\":false,\"preview\":false,\"gitFlag\":false,\"replacePattern\":\"\"}"
-imageDirtyState="0"
-saveActionState="0"
+imageDirtyState="1"
+saveActionState="-1"

.Rproj.user/02275A6F/sources/prop/1767B849

@@ -2,5 +2,5 @@
     "source_window_id": "",
     "Source": "Source",
     "cursorPosition": "42,0",
-    "scrollLine": "0"
+    "scrollLine": "25"
 }

.Rproj.user/02275A6F/sources/prop/B14A132A

@@ -2,6 +2,6 @@
     "tempName": "Untitled1",
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "103,0",
-    "scrollLine": "86"
+    "cursorPosition": "12,27",
+    "scrollLine": "9"
 }

R/functions.R

@@ -10,7 +10,7 @@
 #' @export
 #'
 #' @examples
-#' XML.to.ggPlantmap("ggPm.sample.xml")
+#' XML.to.ggPlantmap("data/ggPm.sample.xml")
 XML.to.ggPlantmap <- function(data) {
   xml.ROI <- XML::xmlToList(data)
   final.ROI <- NULL