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kent Public
Forked from ucscGenomeBrowser/kentUCSC Genome Browser source tree. Stable branch: "beta".
C Other UpdatedOct 7, 2024 -
SARS-CoV2_project_GSE149312 Public
Forked from AnaRom-19/SARS-CoV2_project_GSE149312UpdatedSep 15, 2024 -
cre Public
excel report generation using data from bcbio variant2 germline pipeline
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bcbio-nextgen Public
Forked from bcbio/bcbio-nextgenValidated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Python MIT License UpdatedDec 23, 2023 -
hivdrm Public
Forked from bcbio/hivdrmDetect HIV Drug Resitant Mutations using amplicon sequencing data
Python MIT License UpdatedNov 15, 2023 -
nextflow-to-icav2-config Public
Forked from keng404/nextflow-to-icav2-configR-based helper scripts to generate XML files and modifications to NF configuration files for ICAv2 compatiblity
R UpdatedSep 15, 2023 -
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cloudbiolinux Public
Forked from chapmanb/cloudbiolinuxCloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Python MIT License UpdatedJul 6, 2022 -
overmoyer2021_RNAseq_analysis_of_inflammatory_breast_cancer_hbc04141 Public
Forked from hbc/overmoyer2021_RNAseq_analysis_of_inflammatory_breast_cancer_hbc04141HTML MIT License UpdatedJun 30, 2022 -
Annovar_Whitelist_Filter_WDL Public
Forked from charliecondon/Annovar_Whitelist_Filter_WDLWDL that runs Annovar and a filtering R Script on the output of Mutect2
R MIT License UpdatedJun 28, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMay 5, 2022 -
rowe2020_indrop_citeseq_hbc03948 Public
Forked from hbc/rowe2020_indrop_citeseq_hbc03948Shell UpdatedJan 18, 2022 -
bcbioRNASeq Public
Forked from hbc/bcbioRNASeqR package for bcbio RNA-seq analysis.
R GNU Affero General Public License v3.0 UpdatedDec 14, 2021 -
bcbio_validation_workflows Public
Forked from bcbio/bcbio_validation_workflowsA community menagarie of automated variant validations using bcbio and the Common Workflow Language
Common Workflow Language MIT License UpdatedNov 3, 2021 -
ipython-cluster-helper Public
Forked from roryk/ipython-cluster-helperTool to easily start up an IPython cluster on different schedulers.
Python UpdatedNov 2, 2021 -
OptiType Public
Forked from FRED-2/OptiTypePrecision HLA typing from next-generation sequencing data
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 28, 2021 -
FusionBenchmarking Public
Forked from fusiontranscripts/FusionBenchmarkingToolkit for benchmarking fusion transcript predictions
Perl UpdatedSep 17, 2021 -
crt Public
transcriptome analysis scripts (historically clinical research transcriptome)
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pybedtools Public
Forked from daler/pybedtoolsPython wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
Python Other UpdatedApr 27, 2020 -
Tools for processing UMI RNA-tag data
Python MIT License UpdatedMar 8, 2020 -
mamba-feedstock Public
Forked from conda-forge/mamba-feedstockA conda-smithy repository for mamba.
Shell BSD 3-Clause "New" or "Revised" License UpdatedJan 9, 2020 -
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umic Public archive
barcode counting for inDrops3 single cell RNA-seq protocol
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hbcABC Public
Forked from hbc/hbcABCCompilation of rmarkdown templates for bioinformatics analysis
TeX MIT License UpdatedJun 27, 2019 -
bcbio_validations Public
Forked from bcbio/bcbio_validationsValidation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
HTML UpdatedApr 5, 2019 -
Training-modules Public
Forked from hbctraining/Training-modulesMaterials for short, half-day workshops
CSS UpdatedFeb 9, 2019