vcfdist: Accurately benchmarking phased variant calls

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The complete sequence of a human genome

cython + htslib == fast VCF and BCF processing

A Bayesian model for compositional single-cell data analysis

CUT&RUN and CUT&Tag data processing and analysis

Toolkit for calling structural variants using short or long reads

Decrypting somatic mutation patterns to reveal the evolution of cancer

Fast, efficient RNA-Seq metrics for quality control and process optimization

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies

Characterization of Germline variants

HIVdb webservice client

Helper scripts for bcbio-nextgen

R package for bcbio RNA-seq analysis.

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

Python implementation of the GreyListChIP Bioconductor package

Tool to easily start up an IPython cluster on different schedulers.

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

FusionAnnotator source code

Toolkit for benchmarking fusion transcript predictions

GFF and GTF file manipulation and interconversion

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

Test workflows, run scripts and data for bcbio Common Workflow Language integration