Fix linting from a comment

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Fix linting from a comment

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BWA. paired reads have different names: "SRR1655713.931913", "SRR1655713.3" Fix linting from a comment #135: Issue comment #132 (comment) created by zachary-foster

December 30, 2024 20:03

Important! Template update for nf-core/tools v3.1.0 Fix linting from a comment #134: Issue comment #130 (comment) created by mirpedrol

December 20, 2024 16:00

Important! Template update for nf-core/tools v3.1.0 Fix linting from a comment #133: Issue comment #130 (comment) created by nf-core-bot

December 20, 2024 15:55

IQ-tree SNP error Fix linting from a comment #132: Issue comment #124 (comment) created by buchanri

December 3, 2024 19:55

IQ-tree SNP error Fix linting from a comment #131: Issue comment #124 (comment) created by masudermann

December 3, 2024 18:04

ASSIGN_CONTEXT_REFERENCES error Fix linting from a comment #130: Issue comment #121 (comment) created by cahuparo

November 21, 2024 18:28

Make sure variant calling for eukaryotes takes into account heterozyzgous variants Fix linting from a comment #129: Issue comment #33 (comment) created by masudermann

November 19, 2024 22:49

DOWNLOAD_ASSEMBLIES error Fix linting from a comment #128: Issue comment #25 (comment) created by zachary-foster

November 7, 2024 18:52

picard error - can't find the command Fix linting from a comment #127: Issue comment #26 (comment) created by zachary-foster

November 7, 2024 18:52

Add modules to capture available workflow metadata to pass on to the report Fix linting from a comment #126: Issue comment #32 (comment) created by zachary-foster

November 7, 2024 18:51

If Spades or Bakta fail for small number of samples, is there a way to proceed without these samples? Fix linting from a comment #125: Issue comment #51 (comment) created by zachary-foster

November 7, 2024 18:50

Add input column to define type of nanopore/pacbio sequencing Fix linting from a comment #124: Issue comment #55 (comment) created by zachary-foster

November 7, 2024 18:48

Variant calling uses alternate reference but retains user-defined reference id Fix linting from a comment #123: Issue comment #60 (comment) created by zachary-foster

November 7, 2024 18:47

Check if type strains are being chosen for references Fix linting from a comment #122: Issue comment #61 (comment) created by zachary-foster

November 7, 2024 18:47

BUSCO graphs for assembled genomes Fix linting from a comment #121: Issue comment #77 (comment) created by zachary-foster

November 7, 2024 18:46

read2tree issue on mixed dataset Fix linting from a comment #120: Issue comment #82 (comment) created by zachary-foster

November 7, 2024 18:43

Large and complex test data set Fix linting from a comment #119: Issue comment #92 (comment) created by zachary-foster

November 7, 2024 18:43

assign_mapping_reference not being cached Fix linting from a comment #118: Issue comment #98 (comment) created by zachary-foster

November 7, 2024 18:42

FASTP error: input files don't contain identical amount of reads Fix linting from a comment #117: Issue comment #110 (comment) created by zachary-foster

November 7, 2024 18:38

Sometimes "find_assemblies" returns an empty table without an error Fix linting from a comment #116: Issue comment #112 (comment) created by zachary-foster

November 7, 2024 18:37

Out of date spades may be causing errors with assemblies Fix linting from a comment #115: Issue comment #109 (comment) created by cahuparo

November 5, 2024 20:09

FASTP error: input files don't contain identical amount of reads Fix linting from a comment #114: Issue comment #110 (comment) created by cahuparo

November 5, 2024 20:04

Out of date spades may be causing errors with assemblies Fix linting from a comment #113: Issue comment #109 (comment) created by zachary-foster

November 5, 2024 19:26

FASTP error: input files don't contain identical amount of reads Fix linting from a comment #112: Issue comment #110 (comment) created by zachary-foster

November 5, 2024 18:10

Error when testing xanthomonas small dataset Fix linting from a comment #111: Issue comment #81 (comment) created by zachary-foster

October 31, 2024 23:53

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