π Iβm currently working on single-cell data processing, circRNA analysis, and identification of differentially active transcription factors
π― Iβm looking to collaborate on an Angular package for investigating candidate genes/regions
π± Iβm currently deepening my understanding of biological data and how to process them
π¬ Ask me about nf-core, dependency management, and frontend development
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TUM, Data Science in Systems Biology
- Munich
- https://orcid.org/0000-0002-4639-0935
- in/nico-trummer-401860199
- https://www.researchgate.net/profile/Nico-Trummer
Highlights
- Pro
Pinned Loading
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nf-core/scdownstream
nf-core/scdownstream PublicA single cell transcriptomics pipeline for QC, integration and making the data presentable
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nf-core/circrna
nf-core/circrna PubliccircRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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nf-core/tfactivity
nf-core/tfactivity PublicBioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
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Mye-InfoBank/scRAFIKI
Mye-InfoBank/scRAFIKI PublicA nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
Nextflow 9
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daisybio/TF-Prioritizer
daisybio/TF-Prioritizer PublicBioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Java 13
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