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Achievement: Pair Extraordinairex2Achievement: StarstruckAchievement: Pull Sharkx3Achievement: YOLOAchievement: Quickdraw

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  • scrnaseq Public

    Forked from nf-core/scrnaseq

    A single-cell RNAseq pipeline for 10X genomics data

    Nextflow MIT License Updated Jan 14, 2025

  • dotfiles Public

    Shell Updated Dec 29, 2024

  • bsc-thesis Public

    Jupyter Notebook Updated Dec 4, 2024

  • tools Public

    Forked from mashehu/tools

    Python package with helper tools for the nf-core community.

    Python MIT License Updated Nov 12, 2024

  • rapids_singlecell Public

    Forked from scverse/rapids_singlecell

    Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

    Python MIT License Updated Nov 7, 2024

  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Nov 4, 2024

  • ktplotspy Public

    Forked from zktuong/ktplotspy

    Python library for plotting Cellphonedb results. Ported from ktplots R package.

    Python MIT License Updated Sep 6, 2024

  • nictru Public

    Updated Sep 5, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Aug 26, 2024

  • CIRIquant Public

    Forked from bioinfo-biols/CIRIquant

    circular RNA quantification tools

    Perl MIT License Updated Aug 26, 2024

  • scvi-tools Public

    Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell and spatial omics data

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 25, 2024

  • test-datasets Public

    Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    MIT License Updated Aug 9, 2024

  • psirc Public

    Forked from Christina-hshi/psirc

    Full-length linear and circular transcript isoform reconstruction and quantification

    C++ MIT License Updated Jun 17, 2024

  • algobio Public

    This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.

    bioinformatics bioinformatics-algorithms
    Python 8 1 GNU General Public License v3.0 Updated Jan 28, 2024

  • ehmm Public

    Forked from tobiaszehnder/ehmm

    enhancer hidden Markov model for enhancer predictions based on chromatin marks.

    HTML Updated Dec 1, 2023

  • STARE Public

    Forked from SchulzLab/STARE

    TF analysis from epigenetic and Hi-C data

    C++ MIT License Updated Oct 18, 2023

  • toolbox Public

    Python GNU General Public License v3.0 Updated Jul 27, 2023

  • pyliftover Public

    Forked from konstantint/pyliftover

    Pure-python implementation of UCSC liftOver genome coordinate conversion

    Python MIT License Updated Jul 25, 2023

  • pipeJar Public

    A java pipeline framework

    1 package Java GNU General Public License v3.0 Updated Feb 13, 2023