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pingcap/autoflow is a Graph RAG based and conversational knowledge base tool built with TiDB Serverless Vector Storage. Demo: https://tidb.ai
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
Training documents for OBON DNA data 2024
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Framework for orchestrating role-playing, autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks.
using clip and sam to segment any instance you specify with text prompt of any instance names
The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
Positron, a next-generation data science IDE
DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
New variational autoencoders and deep metric learning based methods improve the dimensionality reduction of environmental DNA metabarcoding data
Amplicon sequence processing workflow using QIIME 2 and Snakemake
Portable solution to generate genome alignment chains using lastz
GPT RStudio addins that enable GPT assisted coding, writing & analysis
aider is AI pair programming in your terminal
Memory-bound taxonomic identification with evolutionary diverse databases.
Align raw nanopore signals to a reference using subsequence DTW
Biological foundation modeling from molecular to genome scale
A fast inference library for running LLMs locally on modern consumer-class GPUs