Visualise a Protein in Virtual Reality

Generic U-Net based diffusion model written in tensorflow

Protein Crystal Classification Using Machine Learning

Calculate the RMSD between two protein structures

Renumbers a PDB protein structure starting at residue 1 and chain A

A bash script for an automated Rosetta Abinitio folding simulation on an HPC

Live Coronavirus Tracker

A Twitter bot for the twitter account of my podcast ILM FM

A small python script that calculates the Radius of Gyration (Rg) of a protein.

An LSTM neural network to generate novel protein sequences

A script that uses Machine Learning to analyse all protein structures in the Protein DataBank (PDB) database

A simple IRC bot that posts a notice when talked to

This script will calculate the solvent-accessible surface (SASA) for each amino acid within a protein and point out which amino acids are in the wrong layer.

This script calculates the different layers (Surface, Boundery, Core) of a protein then opens Pymol to highlight them.

This script generates a Resfile that allows better core packing of a protein.

This script points out if a protein's core has polar amino acids.

A script that submits a query to the XtalPred server for protein crystallisability prediction

A simple Bitcoin (BTC) ticker

A small script that cleans the PDB database

A small script that parses an instagram account and gets all the video or image URLs.

Measures the RMSD for each fragment at each protein structure's position and plots the lowest RMSD fragment for each position

Generate Fragment Picking and PSIPRED secondary structure prediction.

Get Part of a Protein