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Add mhap filtering options to the list of options settable without a …
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…tag (e.g. mhapFilterUnique auto sets corMhapFilterUnique,obt, and utg).
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skoren committed Apr 20, 2017
1 parent 1339b2c commit f75deef
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/pipelines/canu/Defaults.pm
Original file line number Diff line number Diff line change
Expand Up @@ -118,7 +118,7 @@ sub setGlobal ($$) {
}
}

foreach my $opt ("overlapper", "realign") {
foreach my $opt ("overlapper", "realign", "mhapfilterunique", "mhapfilterthreshold") {
$set += setGlobalSpecialization($val, ("cor${opt}", "obt${opt}", "utg${opt}")) if ($var eq "${opt}");
}

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