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Commits on Sep 11, 2017

• Update faq.rst

  skoren

  authored
  cc1e3a4

• Check if settings file exists on SGE before running it (issue marbl#505)

  skoren

  committed
  9374676

Commits on Sep 1, 2017

• Parse # bases as long not int

  skoren

  committed
  14520f8

Commits on Jul 31, 2017

• Update README.md

  skoren

  authored
  0ef11bf

• Merge pull request marbl#571 from hartzell/patch-1

  Show description for 7598417
  skoren

  authored
  7598417

Commits on Jul 27, 2017

• update grid description

  skoren

  authored
  e15d9dc

• Update to use 5padded file names to avoid errors with >10k jobs

  skoren

  committed
  ae0eb5b

Commits on Jul 23, 2017

• Update minimap to minimap2 support with no alignments in correction and alignments in trimming and unitigging

  skoren

  committed
  f02203c

Commits on Jun 13, 2017

• Initialize clear range to 0 not UINT32_MAX to avoid assert fails on reads without any good bases

  skoren

  committed
  542445b

• Increase max limit to 50mb, parse genome size as atol to allow >2gb genome sizes

  skoren

  committed
  492db5b

Commits on Jun 9, 2017

• Truncate evidence for correcting a read to at most template length, bug marbl#519

  skoren

  committed
  2710d31

Commits on Jun 6, 2017

• Add intel.hpp file for boost for intel compilers (issue marbl#516)

  skoren

  committed
  1732822

Commits on May 18, 2017

• Update faq.rst

  skoren

  authored
  862d3f0

Commits on May 17, 2017

• Fix segfault on reads > 4mb (issue marbl#494), reads >2mb still have limited testing

  skoren

  committed
  f05c815

Commits on May 12, 2017

• Increase minimum memory for gfa alignments

  skoren

  committed
  0cfea48

Commits on May 3, 2017

• Allow extra space >max read length if we are correcting a read == max read length this was causing a crash (issue marbl#478)

  skoren

  committed
  fa3eede

Commits on Apr 22, 2017

• Update index.rst

  skoren

  authored
  f7a8ee8

Commits on Apr 20, 2017

• Update README.md

  skoren

  authored
  3d8a192

• Update README.md

  skoren

  authored
  1b8974d

• Update README.citation

  skoren

  authored
  94d6dfa

• Add mhap filtering options to the list of options settable without a tag (e.g. mhapFilterUnique auto sets corMhapFilterUnique,obt, and utg).

  skoren

  committed
  f75deef

• Add span request by default to LSF threading (issues marbl#444, marbl#13)

  skoren

  committed
  1339b2c

• Switch to edlib alignments for consensus from the start, bump up consensus error rate slightly from the overlap error rate

  skoren

  committed
  c3dea7c

• Pass through minimum overlap length

  skoren

  committed
  b6a8122

Commits on Apr 17, 2017

• Update faq.rst

  skoren

  authored
  96aad28

Commits on Apr 13, 2017

• add info that compute nodes must be submit nodes

  skoren

  authored
  723df7c

• Update conf.py

  skoren

  authored
  07e15ea

• Update quick-start.rst

  skoren

  authored
  1cb9106

Commits on Mar 28, 2017

• Update faq.rst

  skoren

  authored
  74942c1

• Update conf.py

  skoren

  authored
  8f91850

Commits on Mar 15, 2017

• set cormincoverage before it is used for estimating corrected read lengths

  skoren

  committed
  bef62eb

• Don't pass filtered mers file to mhap, after precompute it's not used

  skoren

  committed
  6508564

Commits on Mar 9, 2017

• fixes for minimap grid support

  skoren

  committed
  c29cbb6

Commits on Mar 7, 2017

• Fix minimap suport (issue marbl#395)

  skoren

  committed
  35a6573

Commits on Mar 3, 2017

• Fix incorrect file check for splitReads

  skoren

  committed
  79f3bbd

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