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Commits on Jan 1, 2023

• python 2to3 attempt

  

  Savik Kinger

  authored and

  Savik Kinger

  committed
  c6c4502

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Commits on Feb 16, 2018

• fix bug in allele_age; not dealing with new pound sign in front of NAMES/REGION

  mjhubisz

  committed
  f6f3fea

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Commits on Jan 30, 2018

• give allele_age an option to give list of inds instead of list of haps

  mjhubisz

  committed
  d2a1215

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Commits on Jan 2, 2018

• small fix to allele_age (deleting temp files)

  mjhubisz

  committed
  d646f05

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• fixed error parsing -t argument in allele_age

  mjhubisz

  committed
  62c81b2

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Commits on Dec 20, 2017

• updates to allele_age; now can work on subsites of individuals

  mjhubisz

  committed
  82dcbdc

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Commits on Dec 14, 2017

• initial check in of "allele_age" executable; this calls arg-summarize --allele-age repeatedly

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  mjhubisz

  committed
  6584805

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Commits on Apr 5, 2017

• change meanIterTime.sh to look recursively for log files

  mjhubisz

  committed
  885f6bc

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Commits on Feb 15, 2017

• updates to meanIterTime.sh; now reports on mig pruning separately

  mjhubisz

  committed
  8d0c5a4

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Commits on Jan 31, 2017

• clean up meanIterTime.sh to not report error when count=0

  mjhubisz

  committed
  1ae68c6

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• update meanIterTime.sh to include milliseconds

  mjhubisz

  committed
  b4b9396

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Commits on Jan 17, 2017

• added --region option to smc2bed-all script

  mjhubisz

  committed
  5b24ec4

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Commits on Jan 11, 2017

• remove noisy output

  mjhubisz

  committed
  c528140

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Commits on Jan 10, 2017

• meanIterTime.sh now takes list of log files, or single directory

  mjhubisz

  committed
  0bd5359

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Commits on Dec 15, 2016

• update meanIterTime to separate leaf/subtree times

  mjhubisz

  committed
  253d0cb

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• simple script to compute mean MCMC iteration time

  mjhubisz

  committed
  6a84138

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Commits on Sep 21, 2016

• Merge branch 'master' of nextgen:~/argweaver.github into multipop

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  mjhubisz

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Commits on Sep 19, 2016

• added --endnum option to smc2bed-all script

  mjhubisz

  committed
  6251b83

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Commits on Jun 23, 2016

• first draft of smc2bed-all script

  mjhubisz

  committed
  0d282f4

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Commits on Jun 16, 2016

• first draft of smc2bed-all script

  mjhubisz

  committed
  e2bb92d

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Commits on Jun 15, 2015

• added --seed option to arg-sim (for python seed only)

  mjhubisz

  committed
  74f42aa

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Commits on Jun 11, 2015

• add --delta parameter to arg-sim and change way arg-sim calculates coal_times

  mjhubisz

  committed
  a568b90

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Commits on May 22, 2015

• fix arg-sim to interpret single popsize correctly (I had broken it earlier trying to enable it to accept many popsizes)

  mjhubisz

  committed
  2a7a712

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Commits on Jan 29, 2015

• add --not-informative option to subsites to remove singletons (or monomorphic)

  

  melissa

  committed
  befa076

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Commits on Aug 19, 2014

• added getLogLevel() function

  mjhubisz

  committed
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Commits on May 18, 2014

• codequality

  mdrasmus

  committed
  996a03b

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Commits on Mar 23, 2014

• only index layout if it is bgzipped

  mdrasmus

  committed
  d05cf29

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• add discretized sites to arg-sim

  mdrasmus

  committed
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Commits on Oct 1, 2013

• improve arg-serve

  

  Matt Rasmussen

  committed
  853e510

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Commits on Sep 15, 2013

• added *.arg file format doc

  mdrasmus

  committed
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Commits on Sep 12, 2013

• added closing for arg layout reading

  mdrasmus

  committed
  ee6e348

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• add examples of arg-serve

  mdrasmus

  committed
  c5d38cc

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Commits on Sep 10, 2013

• removed old simulation code

  mdrasmus

  committed
  5724ef1

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Commits on Sep 9, 2013

• renamed arghmm to argweaver

  mdrasmus

  committed
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• begin to rename to argweaver

  mdrasmus

  committed
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