PDBRipper is a utility for extract an information from PDB-files.
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Dec 28, 2024 - C
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pdb-files
Here are 79 public repositories matching this topic...
Working with molecular structures in pandas DataFrames
bioinformatics pdb molecular-structures pandas-dataframe protein-structure molecule computational-biology drug-discovery molecules mol2 pdb-files
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Aug 1, 2024 - Python
A comprehensive library for computational molecular biology
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Dec 24, 2024 - Python
An open library for the analysis of molecular dynamics trajectories
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Dec 16, 2024 - Python
macromolecular crystallography library and utilities
structural-biology molecular-structures protein-structure crystallography cif ccp4 mmcif pdb-files mtz
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Dec 27, 2024 - C++
A bunch of parsers for PE and PDB formats in C++
cpp pdb modern-cpp header-only pe pe-format portable-executable pe-file pe-analyzer pdb-files pdb-parser pdb-structure pe-applications pe-parser
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May 15, 2024 - C++
VSCode Extension for interactively visualising protein structure data in the editor
structural-biology pdb protein-structure structure vscode molecule protein vscode-extension pdb-files molstar
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Nov 28, 2024 - TypeScript
Standalone program to download PDB Symbol files for debugging without WDK
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Jun 20, 2019 - C
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
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Oct 21, 2021 - C++
A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.
debugging tool pdb symbols sre callstack sqlserver pdb-files sqlserver-2017 xevents azuresqldb xevent azuresql sqlserver-2019 msdia140 debugging-symbol azuresqlmanagedinstance sqlserver-2022
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Oct 4, 2024 - C#
Small class to parse debug info from PEs, download their respective PDBs from the Microsoft Public Symbol Server and calculate RVAs of functions
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Apr 1, 2023 - C++
Benchmarking common tasks on proteins in various languages and packages
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Dec 27, 2020 - Python
Fast and cross-platform parser for Microsoft PDB files
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Nov 1, 2024 - C#
Library containing code to manipulate mmCIF and PDB files
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Dec 24, 2024 - C++
Cython implementation of PDB -> DataFrame parsing
machine-learning bioinformatics deep-learning structural-biology pdb protein-structure protein pdb-files pdb-parser
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Jun 26, 2023 - Cython
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
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Mar 6, 2024 - Perl
A Python script to map PDB ID + chain ID to UniProt ID.
bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure
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Mar 7, 2024 - Python
A script able to extract ligands from pdb structure(s) and remove them from the original structure. The ligands are identified according to the *valid* ligands found in the binding MOAD database. The ligand can be extracted as a pdb or as a xyz (coordinate) file. Other options such as converting the queried pdb to pqr are available .
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Jul 13, 2022 - Python
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
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Sep 15, 2022 - Emacs Lisp
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