17 Pull requests merged by 2 people

• build(deps): bump indexmap from 2.7.0 to 2.7.1

  #676 merged Jan 27, 2025

• build(deps): bump prost-build from 0.13.3 to 0.13.4

  #675 merged Jan 27, 2025

• build(deps): bump hgvs from 0.17.4 to 0.17.5 in the noodles group

  #663 merged Jan 27, 2025

• fix: include mehari cmd and version info in VCF header

  #673 merged Jan 24, 2025

• fix: ensure FORMAT sample order is in-sync with header sample order

  #671 merged Jan 21, 2025

• build(deps): bump anyhow from 1.0.94 to 1.0.95

  #667 merged Jan 20, 2025

• build(deps): bump enumflags2 from 0.7.10 to 0.7.11

  #666 merged Jan 20, 2025

• build(deps): bump tokio from 1.42.0 to 1.43.0

  #664 merged Jan 13, 2025

• build(deps): bump uuid from 1.11.0 to 1.11.1

  #665 merged Jan 13, 2025

• build(deps): bump itertools from 0.13.0 to 0.14.0

  #660 merged Jan 6, 2025

• build(deps): bump prost from 0.13.3 to 0.13.4

  #661 merged Jan 6, 2025

• build(deps): bump rstest from 0.23.0 to 0.24.0

  #662 merged Jan 6, 2025

• feat: Add rare amino acid SO term

  #658 merged Jan 3, 2025

• fix: inframe vs missense

  #659 merged Jan 3, 2025

• build(deps): bump nutype from 0.5.0 to 0.5.1

  #657 merged Dec 30, 2024

• build(deps): bump serde from 1.0.215 to 1.0.217

  #655 merged Dec 30, 2024

• build(deps): bump serde_with from 3.11.0 to 3.12.0

  #656 merged Dec 30, 2024

1 Pull request opened by 1 person

• build(deps): bump rand_core from 0.6.4 to 0.9.0

  #674 opened Jan 27, 2025

7 Issues closed by 1 person

• Report of databases, commands and mehari version used for annotation in vcf files

  #670 closed Jan 24, 2025

• `annotate strucvars` (re-)sorts sample names and changes association with correct data

  #668 closed Jan 21, 2025

• Fix missense vs. deletion variant

  #17 closed Jan 3, 2025

• Further perform cross-validation with VEP

  #38 closed Jan 3, 2025

• Termination positions for Frameshift/Nonesence SeqVars are not set properly

  #437 closed Jan 3, 2025

• Profile mehari

  #430 closed Jan 3, 2025

• Write out data versions when building transcripts database

  #601 closed Jan 3, 2025

2 Issues opened by 1 person

• tsv output can contain empty sample/genotype-data which causes bugs in varfish

  #672 opened Jan 21, 2025

• `annotate seqvars` tsv export transcript selection is not apparent

  #669 opened Jan 21, 2025

10 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• feat: Consolidate CLI

  #650 commented on Jan 24, 2025 • 7 new comments

• Consolidate CLI between servars/strucvars annotate and server

  #627 commented on Jan 3, 2025 • 0 new comments

• Eventually cleanup endpoints without OpenAPI schema

  #608 commented on Jan 3, 2025 • 0 new comments

• Add "intergenic" consequence

  #494 commented on Jan 3, 2025 • 0 new comments

• Compare mehari annotation with VEP annotation

  #449 commented on Jan 3, 2025 • 0 new comments

• Implement multiallelic variants/variant normalization

  #447 commented on Jan 3, 2025 • 0 new comments

• unannotated MT variants for RefSeq

  #441 commented on Jan 3, 2025 • 0 new comments

• Genome builds have no unified format

  #408 commented on Jan 3, 2025 • 0 new comments

• Define transcript preference

  #264 commented on Jan 3, 2025 • 0 new comments

• chore(main): release 0.31.0

  #642 commented on Jan 24, 2025 • 0 new comments