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AKITA_LCM_RNASeq_Treatment Public
This study includes 54 mouse kidney samples stratified into 9 groups based on disease, treatment, and genotype explanatory variables. The table below summarizes the experimental design.
HTML MIT License UpdatedNov 29, 2024 -
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sgRNA_library Public
This repository contains the Google Colab notebook for single guide RNA library characterization
Jupyter Notebook UpdatedAug 26, 2023 -
awesome-deep-learning-single-cell-papers Public
Forked from OmicsML/awesome-deep-learning-single-cell-papersApache License 2.0 UpdatedApr 20, 2023 -
TSCAN Public
Forked from LTLA/TSCANClone of the Bioconductor repository for the TSCAN package.
R UpdatedApr 11, 2021 -
bioc2020trajectories Public
Forked from kstreet13/bioc2020trajectoriesTrajectory inference and differential expression over multiple conditions in scRNA-seq
R Other UpdatedJan 7, 2021 -
plantmetaBolGCMS Public
code repo for the Plant Science paper published on GC-MS
HTML MIT License UpdatedNov 20, 2020 -
Artificial-Intelligence-Deep-Learning-Machine-Learning-Tutorials Public
Forked from TarrySingh/Artificial-Intelligence-Deep-Learning-Machine-Learning-TutorialsA comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas …
Python Other UpdatedNov 18, 2020 -
mars Public
Forked from snap-stanford/marsDiscovering novel cell types across heterogenous single-cell experiments
Jupyter Notebook UpdatedSep 27, 2020 -
genomics Public
Forked from fls-bioinformatics-core/genomicsScripts, utilities and programs for genomic bioinformatics.
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scCellTypeAnnotation Public
This repository will keep populating paper links and tool names that are currently in pre-print stage or published for Cell Type Identification, Annotation and Labeling.
MIT License UpdatedAug 21, 2020 -
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multiOmicsIntegration Public template
Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
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hypeR-workshop Public
Forked from montilab/hypeR-workshopEfficient, Scalable, and Reproducible Enrichment Workflows
Dockerfile GNU General Public License v3.0 UpdatedJul 28, 2020 -
awesome-bioinformatics-benchmarks Public
Forked from j-andrews7/awesome-bioinformatics-benchmarksA curated list of bioinformatics bench-marking papers and resources.
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E-MTAB-6141 Public
Forked from kevinblighe/E-MTAB-6141Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
UpdatedMay 21, 2020 -
singleCellDataSets Public
This is a repository for all the single cell datasets that I am accuring from public repositories
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scDataviz Public
Forked from kevinblighe/scDatavizscDataviz: single cell dataviz and downstream analyses
R UpdatedFeb 15, 2020 -
R_hacks Public
Forked from komalsrathi/R_hacksSimple commands to make coding in R easier!
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PHATE Public
Forked from KrishnaswamyLab/PHATEPHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Python GNU General Public License v2.0 UpdatedDec 3, 2019 -
excelerate-scRNAseq Public
Forked from NBISweden/excelerate-scRNAseqSingle RNA-seq data analysis with R (Finland, May, 2019)
HTML UpdatedNov 5, 2019 -
Single-cell-RNA-sequencing-of-human-kidney Public
Forked from lessonskit/Single-cell-RNA-sequencing-of-human-kidneyR-code used for single-cell RNA-Seq analysis of kidney data.
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scRNAseq_Benchmark Public
Forked from tabdelaal/scRNAseq_BenchmarkBench-marking classification tools for scRNA-seq data
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scRNA.seq.datasets Public
Forked from hemberg-lab/scRNA.seq.datasetsCollection of public scRNA-Seq datasets used by our group
R GNU General Public License v3.0 UpdatedOct 9, 2019 -
SingleCellExperiment Public
Forked from drisso/SingleCellExperimentClone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
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scRNAseq_cell_cluster_labeling Public
Forked from jdime/scRNAseq_cell_cluster_labelingScripts to run and benchmark scRNA-seq cell cluster labeling methods
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SCMarker Public
Forked from KChen-lab/SCMarkerMarker gene selection from scRNA-seq data
R UpdatedJun 21, 2019 -
swirl_courses Public
Forked from swirldev/swirl_courses🎓 A collection of interactive courses for the swirl R package.
R Other UpdatedDec 1, 2018 -
scRNA-seq-datasets Public
Forked from aanchalMongia/scRNA-seq-datasetsRaw data with annotations
UpdatedNov 14, 2018