A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

Open source code for AlphaFold.

Deep probabilistic analysis of single-cell omics data

RNA Velocity generalized through dynamical modeling

Multiple Pairwise Comparisons (Post Hoc) Tests in Python

Warp is a blazingly-fast modern Rust based GPU-accelerated terminal built to make you and your team more productive.

An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization

Gene Set Enrichment Analysis in Python

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Tools (written in C using htslib) for manipulating next-generation sequencing data

Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

scSNV Mapping tool for 10X Single Cell Data

Strelka2 germline and somatic small variant caller

CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by…