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Achievement: Arctic Code Vault ContributorAchievement: Pull SharkAchievement: Starstruck

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull SharkAchievement: Starstruck

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@limno

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  • sae_course Public

    A example repository for testing

    Python Updated Nov 22, 2024

  • waste_flow Public

    A package for retrieving and analyzing data concerning waste management on the European continent.

    eurostat waste-management
    Python 4 MIT License Updated Oct 4, 2024

  • crest4 Public

    The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.

    bioinformatics dna-sequences taxonomic-classification 16s-rrna
    Python 5 GNU General Public License v3.0 Updated Jun 18, 2024

  • bumphub Public

    Scripts to automate distribution and packaging of python modules on PyPI and conda

    packaging pypi conda
    Python MIT License Updated Sep 13, 2023

  • crest4_utils Public

    Utilities and scripts usefull for the developement of `crest4`

    Python Updated Sep 6, 2023

  • seqsearch Public

    Sequence similarity searches (e.g. BLAST) made easy

    bioinformatics database-management blast-search sequence-analysis
    Python 2 1 MIT License Updated Sep 6, 2023

  • fasta Public

    This package enables you to deal with biological sequence files easily.

    bioinformatics fasta-format
    Python 7 4 MIT License Updated Sep 5, 2023

  • autopaths Public

    autopaths is a python package for dealing with file paths and automation.

    python filepath
    Python 1 2 MIT License Updated Oct 18, 2022

  • pacmill Public

    The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with ot…

    bioinformatics-pipeline dna-sequences pacbio-data 16s-rrna pdf-reports
    Python 2 MIT License Updated May 19, 2022

  • forest_puller Public

    This python package lets you automatically download and parse european forest data from several different public sources.

    visualization open-data python-pandas forest-inventory
    Python 5 MIT License Updated May 19, 2022

  • optmagic Public

    This project enables you to create simple command line interfaces starting with a class or a function that you want to expose directly to the shell.

    command-line argument-parser
    Python 1 MIT License Updated May 19, 2022

  • plumbing Public

    Helps with plumbing-type programing in python.

    python pipeline
    Python 5 3 MIT License Updated Apr 1, 2022

  • libcbm_runner Public

    `libcbm_runner` is a python package for automating simulations of forest growth and harvesting involving the European economy, carbon budgets and their interactions.

    python3 forestry carbon-emissions simulation-model european-union
    Python 3 MIT License Updated Jan 11, 2022

  • pymarktex Public

    Will convert a markdown text file to a fancy PDF document.

    markdown latex-pdf report-generator
    Python 2 MIT License Updated Dec 16, 2021

  • libcbm_py Public

    Forked from cat-cfs/libcbm_py

    Carbon budget model library based on CBM-CFS3

    Python Mozilla Public License 2.0 Updated Nov 25, 2021

  • cbmcfs3_runner Public

    `cbmcfs3_runner` is a python package for dealing with the automation and running of a complex series of models involving the European economy, carbon budgets and their interactions. Notably in rela…

    Python 2 MIT License Updated Oct 27, 2021

  • pydirdiff Public

    This tool compares two directories recursively and prints any differences.

    Python 2 1 MIT License Updated Jul 19, 2021

  • seqenv Public

    Assign environment ontology (EnvO) terms to DNA sequences

    Python 9 6 MIT License Updated Jul 19, 2021

  • sifes Public

    Pipeline for 16S microbial environmental sequencing

    Python Other Updated Jul 19, 2021

  • q2-crest4 Public

    This is a QIIME 2 plugin for taxonomic classification of sequences

    Updated May 26, 2021

  • puller_cache Public

    A repository to revision control some of the smaller files contained in the cache of the `forest_puller` project.

    cache-storage
    TeX Updated Feb 26, 2021

  • pbs3 Public

    Forked from amoffat/sh

    Python process launching (that works on Windows and Python 3)

    Python 3 MIT License Updated Aug 25, 2020

  • gefes Public

    Genome Extraction From Environmental Sequencing

    Python 1 Other Updated Jul 21, 2020

  • sinclair.bio Public

    The website with a jekyll theme

    JavaScript MIT License Updated Apr 29, 2019

  • python_ebc_2016 Public

    Material for the python course to be held at EBC in 2016

    Python 7 Updated Oct 25, 2016

  • python_homework Public

    A repository to contain exercices and homework for the Python EBC 2016 course

    17 MIT License Updated Oct 16, 2016

  • ld12 Public

    Analysis of the LD12 genomes and the freshwater genomes for the "Tuning fresh" paper

    Python MIT License Updated Apr 4, 2016

  • track Public

    Provides easy read/write access to genomic tracks

    Python 22 3 GNU General Public License v3.0 Updated Mar 18, 2016

  • genomes Public

    Easy access to meta data about genome assemblies

    Python MIT License Updated Dec 15, 2014

  • pyrotrfid Public

    This project is a pipeline to perform digital TRFLP.

    Python 1 GNU General Public License v3.0 Updated Nov 2, 2012