Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to insert them into canvas genomes (in SAM/BAM/CRAM format).

Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplica…

gatk4 RNA variant calling pipeline

Multiple Protein Structure Alignment at Scale with FoldMason

A curated list of awesome nanopore analysis tools.

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with oth…

Add alluvial / sankey diagram layers to a ggplot

Documentation and tutorials on using GCP for biomedical research

Create beautiful Gantt charts with ggplot2

Direct estimation of mean and covariance from single cell RNA seq experiments

R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data

Tool to plot synteny and structural rearrangements between genomes

Complete Reconstruction of Amplifications with Long reads

SNV calling from single cell sequencing

Creating donut charts without a hassle

A tool for timing complex copy number gains in cancer.

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

Fast and accurate coordinate conversion between assemblies

Pipeline to detect HLA disruption from WES and RNAseq data