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Issues list

bgen utilities in executable binary files
#42 opened Oct 31, 2017 by ppjeep
bed bim fam as inputs enhancement
#6 opened Jun 28, 2016 by gpcr
1
Core-dump possibly due to out of memory
#8 opened Aug 1, 2016 by misshie
@zhanxw
1
frequency rvtest single variant analysis enhancement
#11 opened Jan 11, 2017 by medinacarolina
@zhanxw
2
VT analytic enhancement
#12 opened Jan 30, 2017 by Rosadosa
3
Empty individual column - very strange!! need_further_investigation
#21 opened Apr 21, 2017 by jielab
@zhanxw
3
unbelievable slow speed for --siteFile need_further_investigation
#26 opened Apr 30, 2017 by jielab
4
still negative AF, for binary trait
#27 opened May 8, 2017 by jielab
6
LOG message goes to standard error
#31 opened May 23, 2017 by jielab
7
Extra column Kinship matrix
#35 opened Jun 19, 2017 by medinacarolina
7
Missing and unexpected column when running chrX analysis.
#36 opened Jul 13, 2017 by zishang30
Segmentation fault when reading BGEN file
#38 opened Sep 14, 2017 by jielab
6
Optimized SKAT (SKAT-O) enhancement
#2 opened Jul 17, 2015 by gpcr
5
could not specify multiple phenotypes.
#39 opened Sep 14, 2017 by jielab
3
AF column in results and HWE
#43 opened Nov 1, 2017 by medinacarolina
For gene level models, do they work with rare variants only (i.e., is it required to set --freqUpper 0.05)?
#44 opened Nov 2, 2017 by ppjeep
2
Cox regression in RVTest for time to even analysis
#45 opened Nov 14, 2017 by AniketMishra
BGEN format on UK Biobank data does not work properly
#46 opened Nov 19, 2017 by jielab
1
Segmentation fault with condition option
#48 opened Nov 29, 2017 by jgmayer67
4
SnpEff annotated VCF
#49 opened Dec 6, 2017 by Thatguy027
1
Output specification
#50 opened Dec 8, 2017 by bibb
8
Pvalue shows "-nan" in output of gene level association test
#51 opened Jan 2, 2018 by ppjeep
3
Allele frequency column does not match N_REF,N_HET,N_ALT column
#52 opened Jan 19, 2018 by sgrosche
1
bgen -recessive analysis - issue with range list need_further_investigation
#53 opened Jan 31, 2018 by cgrace1978
exactCMC N00 is less than N10 and N01 < N11
#153 opened Apr 19, 2024 by samreenzafer
ProTip! no:milestone will show everything without a milestone.