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Pull requests: bodkan/slendr

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Pull requests list

Reschedule finishing block to the first() phase of the final tick
#160 by bodkan was merged Oct 30, 2024 Loading…
1
Change handling of output paths
#157 by bodkan was merged Oct 8, 2024 Loading…
1
Fix handling of "truncated" models and forward models starting at times larger than just 1
#156 by bodkan was merged May 24, 2024 Loading…
1
1
Support for non-neutral slendr/SLiM simulations via custom, user-defined SLiM code
#155 by bodkan was merged May 7, 2024 Loading…
10
Add support for SLiM simulations on Windows
#149 by bodkan was merged Feb 6, 2024 Loading…
38
Avoid repeated resetting of spatial bounds (closes #147)
#148 by bodkan was merged Jan 16, 2024 Loading…
1
Implement experimental support for the tspop algorithm
#145 by bodkan was merged Nov 27, 2023 Loading…
5
Support for manually created tree sequences with spatial information
#144 by bodkan was merged Oct 18, 2023 Loading…
2
Update engines.R
#142 by GKresearch was closed Jan 18, 2024 Loading…
7
Implement rudimentary, experimental IBD squashing
#138 by bodkan was merged Jun 2, 2023 Loading…
Fix saving / loading of tree sequences after simplification to a subset of sampled individuals
#137 by bodkan was merged May 11, 2023 Loading…
3
Change the plot_model layout algorithm
#135 by bodkan was merged Apr 25, 2023 Loading…
7
Fixing various gene flow errors
#134 by bodkan was merged Apr 22, 2023 Loading…
2
Fixes for minor issues discovered during work on demografr and other things
#130 by bodkan was merged Apr 7, 2023 Loading…
2
New ts_ibd function
#123 by bodkan was merged Mar 3, 2023 Loading…
2
Use NOT_CRAN=false on Windows-based GitHub Actions
#122 by bodkan was merged Feb 2, 2023 Loading…
1
Allow for the possibility to have non-spatial populations in an otherwise spatial model
#121 by bodkan was merged Feb 2, 2023 Loading…
1
Fix undesirable artefacts during map zooming/cropping for some CRS
#120 by bodkan was merged Jan 22, 2023 Loading…
1
2
Do not automatically activate slendr Python virtual environment upon loading the package
#118 by bodkan was merged Jan 16, 2023 Loading…
Make serialization of slendr models to disk optional (for faster msprime coalescent runs)
#112 by bodkan was merged Sep 6, 2022 Loading…
2
Port slendr to SLiM 4.0 and update Python dependencies
#104 by bodkan was merged Aug 18, 2022 Loading…
3
Windows port of the msprime functionality
#102 by bodkan was merged Aug 8, 2022 Loading…
4
Changing the way tree-sequence outputs are handled by default
#100 by bodkan was merged Jul 21, 2022 Loading…
4
Generalize the R-tskit interface towards non-slendr tree sequences
#91 by bodkan was merged Jun 22, 2022 Loading…
31
Make the msprime backend first-class citizen in slendr
#80 by bodkan was merged Feb 10, 2022 Loading…
1
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