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2,123 Open 4,273 Closed
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Issues list

Default histories for tools are no longer respected within the UI. Affects Data Managers area/tool-framework kind/bug
#2503 opened Jun 14, 2016 by blankenberg
When copying a history, assign user as last step area/API kind/enhancement
#2526 opened Jun 22, 2016 by carlfeberhard
Add link to metadata_files in API HDA contents area/API feature-request
#2560 opened Jun 27, 2016 by jgoecks
Integrate DeepBlue Epigenomic Data Server in Galaxy
#2584 opened Jul 5, 2016 by felipealbrecht
Have plugin configurations be cascadable area/framework area/visualizations kind/enhancement status/planning
#2614 opened Jul 14, 2016 by carlfeberhard
Delete outputs of subworkflows area/workflows/subworkflows kind/bug
#2627 opened Jul 19, 2016 by ThomasWollmann
@mvdbeek
Support referencing certain conda environment paths via environment variables. area/tool-framework kind/enhancement status/planning
#2649 opened Jul 25, 2016 by jmchilton
notify user about toolrun that has failed dependency resolution (and falls back)
#2655 opened Jul 25, 2016 by martenson
Bug: History item being viewed is not marked when it's part of a collection area/dataset-collections area/UI-UX
#2683 opened Jul 28, 2016 by lparsons
Shared history sort order is sub-optimal for old update + newly shared history case area/UI-UX feature-request help wanted also "hacktoberfest", beginner friendly set of issues status/planning
#2698 opened Aug 1, 2016 by hexylena
Histories shared with me: Enhancement requests for "Copy" function area/UI-UX feature-request kind/enhancement
#2719 opened Aug 3, 2016 by jennaj
3 tasks
Galaxy's Download local tool admin functionality broken
#2722 opened Aug 4, 2016 by martenson
Workflow Tool Panel Search Limitted area/UI-UX area/workflows kind/bug
#2746 opened Aug 5, 2016 by jmchilton
Unable to use dataset edit attribute to change dataset type on Jetstream instances area/datatypes
#2815 opened Aug 18, 2016 by tnabtaf
cleanup scripts --force_retry unsafe
#2906 opened Sep 9, 2016 by scholtalbers
Error from mercurial/worker.py while installing repository from tool shed
#2910 opened Sep 12, 2016 by marpiech
Create a job metrics plugin to calculate amount of time metadata collection takes. area/jobs help wanted also "hacktoberfest", beginner friendly set of issues
#2999 opened Oct 3, 2016 by jmchilton
Should not automatically switch histories after Copy / Import area/histories area/UI-UX kind/bug
#3048 opened Oct 13, 2016 by blankenberg
"Published Workflows" missing under "Workflows" menu feature-request
#3092 opened Oct 25, 2016 by peterjc
Could you include PICRUST in the Main Galaxy?
#3111 opened Oct 30, 2016 by adriapd
Cuffdiff output options can result in no output
#3114 opened Nov 1, 2016 by MoHeydarian
move message box configuration to the admin menu
#3138 opened Nov 8, 2016 by martenson
@natefoo
Tool Shed: Display tool versions on revision history page area/toolshed kind/enhancement
#3142 opened Nov 9, 2016 by natefoo
metadata with dynamic destinations
#3147 opened Nov 10, 2016 by laure182
Take advantage of filtering datasets by metadata in workflows area/workflows kind/enhancement
#3151 opened Nov 11, 2016 by jmchilton
ProTip! Exclude everything labeled bug with -label:bug.