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aslprep
Tools related to ASL or ASLPrep.BIDS-related tools
Tools/materials related to BIDS.Complex-valued (f)MRI
Tools for working with complex MRI data (magnitude + phase), especially fMRI.Cool neuroimaging tools
A list of interesting neuroimaging tools that I would love to use some day.Educational materials
Tutorials and other education-oriented repositories.Meta-analysis/NiMARE stuff
Things related to meta-analysis. Some may include methods I would like to incorporate into NiMARE directly, or may use NiMARE as a dependency.xcpd
Tools that might be relevant for xcpd.Stars
Reconstruction of preprocessed q-space images (dMRI)
Complex Principal Component Analysis of fMRI in Python
complex-value Fourier-ICA analysis for ongoing EEG recorded during music-listening
pNet is a Python package for computing personalized, sparse, non-negative large-scale functional networks from functional magnetic resonance imaging (fMRI) data, particularly resting state fMRI data.
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
CEMVS algorithm for the physically realistic simulation analysis in the JASA paper: A Bayesian Variable Selection Approach Yields Improved Detection of Brain Activation From Complex-Valued fMRI
The code available in this folder implements the simulation experiment from the paper titled Iqbal, A., Nait-Meziane, M., Seghouane, A.-K., and Abed-Meraim, K.: ‘Adaptive complex-valued dictionary …
Code accompanying data release of natural language listening fMRI data (LeBel et al.)
Patch based denoising method, targeting fMRI thermal noise removal.
BIDS-compatible pyGluCEST Pipeline and user-friendly package
Multiband Censoring Optimization Tool (MCOT) for Resting-State Functional Connectivity Analyses
Official implementation of the paper "Estimation of continuous valence and arousal levels from faces in naturalistic conditions", Antoine Toisoul, Jean Kossaifi, Adrian Bulat, Georgios Tzimiropoulo…
Comparing the effect of multi gradient echo and multi band fMRI during a semantic task
Single-shot resampling utility for nipreps derivatives
Implementation of the independent vector analysis (IVA) algorithm using a multivariate Laplace prior
Independent Vector Analysis (IVA-G and IVA-L-SOS) implemented in Python
Python-based Reliability in MRI: Calculating Group level and Individual Level Similarity between runs and sessions.
S-ACF: A selective estimator for the autocorrelation function of irregularly sampled time series
Demo of using a monorepo to generate multiple packages with hatchling
Multiband Artifact Regression in Simultaneous Slices (MARSS)